NMR paper NMR and crystallography--complementary approaches to structure determination.

		BioNMR > Educational resources > Journal club
[NMR paper] NMR and crystallography--complementary approaches to structure determination.

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-22-2010, 03:33 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,733

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR and crystallography--complementary approaches to structure determination.

NMR and crystallography--complementary approaches to structure determination.

Related Articles NMR and crystallography--complementary approaches to structure determination.

Trends Biotechnol. 1994 May;12(5):149-53

Authors: MacArthur MW, Driscoll PC, Thornton JM

A knowledge of the three-dimensional structure of a protein is essential to understand how a protein performs its functions. It is also a prime requirement for the rational design of novel sequences with specific structural, chemical or catalytic properties. Until recently, such information could only be obtained from X-ray diffraction studies on protein crystals. In the past few years, however, nuclear magnetic resonance (NMR) spectroscopy in solution has rapidly become established as an effective alternative method. This review briefly examines the two techniques and their relevance to protein engineering and design.

PMID: 7764895 [PubMed - indexed for MEDLINE]

Source: PubMed

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
iHADAMAC: a complementary tool for sequential resonance assignment of globular and highly disordered proteins iHADAMAC: a complementary tool for sequential resonance assignment of globular and highly disordered proteins Publication year: 2011 Source: Journal of Magnetic Resonance, Available online 9 November 2011</br> SophieFeuerstein, Michael J.Plevin, DieterWillbold, BernhardBrutscher</br> An experiment, iHADAMAC, is presented that yields information on the amino-acid type of individual residues in a protein by editing theH-N correlations into 7 different 2D spectra, each corresponding to a different class of amino-acid types. Amino-acid type discrimination is realized via a Hadamard...	nmrlearner	Journal club	0	11-10-2011 07:38 AM
Toward a Structure Determination Method for Biomineral-Associated Protein Using Combined Solid- State NMR and Computational Structure Prediction. Toward a Structure Determination Method for Biomineral-Associated Protein Using Combined Solid- State NMR and Computational Structure Prediction. Related Articles Toward a Structure Determination Method for Biomineral-Associated Protein Using Combined Solid- State NMR and Computational Structure Prediction. Structure. 2010 Dec 8;18(12):1678-1687 Authors: Masica DL, Ash JT, Ndao M, Drobny GP, Gray JJ Protein-biomineral interactions are paramount to materials production in biology, including the mineral phase of hard tissue. Unfortunately, the...	nmrlearner	Journal club	0	12-08-2010 06:21 PM
[NMR paper] NMR structure determination and structure-based functional characterization of conser NMR structure determination and structure-based functional characterization of conserved hypothetical protein MTH1175 from Methanobacterium thermoautotrophicum. Related Articles NMR structure determination and structure-based functional characterization of conserved hypothetical protein MTH1175 from Methanobacterium thermoautotrophicum. J Struct Funct Genomics. 2000;1(1):15-25 Authors: Cort JR, Yee A, Edwards AM, Arrowsmith CH, Kennedy MA The solution structure of MTH1175, a 124-residue protein from the archaeon Methanobacterium...	nmrlearner	Journal club	0	11-18-2010 09:15 PM
NMR in a crystallography-based high-throughput protein structure-determination enviro NMR in a crystallography-based high-throughput protein structure-determination environment. Related Articles NMR in a crystallography-based high-throughput protein structure-determination environment. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt 10):1365-6 Authors: Wüthrich K An introduction is provided to three papers which compare corresponding protein crystal and NMR solution structures determined by the Joint Center for Structural Genomics (JCSG). Special mention is made of the JCSG strategy for combined use of the two...	nmrlearner	Journal club	0	10-16-2010 03:56 PM
[NMR paper] NMR and crystallography--complementary approaches to structure determination. NMR and crystallography--complementary approaches to structure determination. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles NMR and crystallography--complementary approaches to structure determination. Trends Biotechnol. 1994 May;12(5):149-53 Authors: MacArthur MW, Driscoll PC, Thornton JM A knowledge of the three-dimensional structure of a protein is essential to understand how a protein performs its functions. It is also a prime requirement for the rational design...	nmrlearner	Journal club	0	08-22-2010 03:33 AM
[NMR paper] 1H- and 19F-NMR approaches to the study of the structure of proteins larger than 25 k 1H- and 19F-NMR approaches to the study of the structure of proteins larger than 25 kDa. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles 1H- and 19F-NMR approaches to the study of the structure of proteins larger than 25 kDa. Int J Biol Macromol. 1994 Oct;16(5):227-35 Authors: Gettins PG The three-dimensional solution structures of proteins larger than about 25 kDa cannot at present be determined by multi-dimensional nuclear magnetic resonance (NMR) methods. However,...	nmrlearner	Journal club	0	08-22-2010 03:29 AM
[NMR paper] Interaction of two complementary fragments of the bovine spinal cord myelin basic pro Interaction of two complementary fragments of the bovine spinal cord myelin basic protein with phosphatidylglycerol bilayers, studied by 2H and 31P NMR spectroscopy. Related Articles Interaction of two complementary fragments of the bovine spinal cord myelin basic protein with phosphatidylglycerol bilayers, studied by 2H and 31P NMR spectroscopy. Biochemistry. 1993 Sep 21;32(37):9709-13 Authors: Hayer-Hartl M, Brophy PJ, Marsh D, Watts A The interaction of two complementary fragments of myelin basic protein from bovine spinal cord with...	nmrlearner	Journal club	0	08-22-2010 03:01 AM
[NMR paper] Solid-state NMR approaches for studying membrane protein structure. Solid-state NMR approaches for studying membrane protein structure. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--arjournals.annualreviews.org-images-AnnualReviews100x25.gif Related Articles Solid-state NMR approaches for studying membrane protein structure. Annu Rev Biophys Biomol Struct. 1992;21:25-47 Authors: Smith SO, Peersen OB	nmrlearner	Journal club	0	08-21-2010 11:41 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off