NMR Characterization of a "Fibril-Ready" State of Demetalated Wild-Type Superoxide Dismutase.
J Am Chem Soc. 2010 Dec 16;
Authors: Banci L, Bertini I, Blaževitš O, Cantini F, Lelli M, Luchinat C, Mao J, Vieru M
Demetalated superoxide dismutase (SOD1) is a transient species, fibrillogenic in nature and of biomedical interest. It is a conformationally disordered protein difficult to characterize. We have developed a strategy based on the NMR investigation of a crystalline species characterized by X-ray crystallography and on the comparison of the solid-state-solution-state chemical shifts. The solid-state assignment has been also helpful in assigning the solution spectra. The solution NMR spectra presumably detect species that are the result of equilibria among multiple species. From the differences in chemical shifts between the two forms, we learned that a ?-sheet becomes conformationally labile and two loops in the same sheet show propensity to take a ? conformation. This strategy, which exploits solution and solid-state NMR spectra in a synergistic way, thus provides information on the species that are prone to oligomerize.
PMID: 21162535 [PubMed - as supplied by publisher]
[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel
Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel
Hi Ben, I'll tinker with the Makefiles per your suggestion and see if I can make some progress. Thanks again ! ... Nate Michals Jr. Systems Administrator
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nmrlearner
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02-10-2011 08:25 AM
[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel
Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel
Hi Pryank, Thanks for the suggestion. I tried this, and it seems to fail with the message: Installation directory: /usr/local/cns_solve_1.3/mac-intel-darwin
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nmrlearner
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02-10-2011 08:25 AM
[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel
Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel
Hi Nate, ... That looks fine. The hpc.sourceforge.net compilers install to /usr/local/bin, so you can also run 'which gfortran' to ensure that it's picking up
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nmrlearner
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02-09-2011 08:23 PM
[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel
Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel
... That would explain it, but then this in CNS installation instructions must be incorrect: "A binary installation is available for Intel Macintosh OS X,
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nmrlearner
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02-09-2011 08:23 PM
[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel
Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel
Fully realizing how ridiculous it is for me to provide any advice on Apple products, but what does getarch returns on this system? I presume that you mean
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nmrlearner
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02-09-2011 08:23 PM
[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel
Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel
Thank you Kevin and Alex for your suggestions. I tried both solutions (separately and together), but still encounter the same problem. (Bad CPU type in
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nmrlearner
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02-09-2011 08:23 PM
NMR Characterization of a “Fibril-Ready” State of Demetalated Wild-Type Superoxide Dismutase
NMR Characterization of a “Fibril-Ready” State of Demetalated Wild-Type Superoxide Dismutase
Lucia Banci, Ivano Bertini, Olga Blaževitš, Francesca Cantini, Moreno Lelli, Claudio Luchinat, Jiafei Mao and Miguela Vieru
http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja1069689/aop/images/medium/ja-2010-069689_0006.gif
Journal of the American Chemical Society
DOI: 10.1021/ja1069689
http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA
http://feeds.feedburner.com/~r/acs/jacsat/~4/uAjKy7vWoHs
nmrlearner
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12-17-2010 12:50 AM
[NMR paper] Spectroscopic characterization of polyethyleneglycol modified superoxide dismutase: 1
Spectroscopic characterization of polyethyleneglycol modified superoxide dismutase: 1H NMR studies on its Cu2Co2 derivative.
Related Articles Spectroscopic characterization of polyethyleneglycol modified superoxide dismutase: 1H NMR studies on its Cu2Co2 derivative.
J Inorg Biochem. 1990 Jun;39(2):149-59
Authors: Banci L, Bertini I, Caliceti P, MonsĂą Scolaro L, Schiavon O, Veronese FM
Spectroscopic methods have been employed in order to understand the molecular basis of the decrease in enzymatic activity of the antiinflammatory enzyme...