[NMR paper] The NMR-based characterization of the FTY720-SET complex reveals an alternative mechanism for the attenuation of the inhibitory SET-PP2A interaction.
The NMR-based characterization of the FTY720-SET complex reveals an alternative mechanism for the attenuation of the inhibitory SET-PP2A interaction.
FASEB J. 2019 Mar 27;:fj201802264R
Authors: De Palma RM, Parnham SR, Li Y, Oaks JJ, Peterson YK, Szulc ZM, Roth BM, Xing Y, Ogretmen B
Abstract
The su(var)3-9, enhancer of zeste, trithorax (SET)/inhibitor 2 of protein phosphatase 2A (PP2A) oncoprotein binds and inhibits PP2A, composed of various isoforms of scaffolding, regulatory, and catalytic subunits. Targeting SET with a sphingolipid analog drug fingolimod (FTY720) or ceramide leads to the reactivation of tumor suppressor PP2A. However, molecular details of the SET-FTY720 or SET-ceramide, and mechanism of FTY720-dependent PP2A activation, remain unknown. Here, we report the first in solution examination of the SET-FTY720 or SET-ceramide complexes by NMR spectroscopy. FTY720-ceramide binding resulted in chemical shifts of residues residing at the N terminus of SET, preventing its dimerization or oligomerization. This then released SET from PP2AC?, resulting in PP2A activation, while monomeric SET remained associated with the B56?. Our data also suggest that the PP2A holoenzyme, composed of PP2A-A?, PP2A-B56?, and PP2AC? subunits, is selectively activated in response to the formation of the SET-FTY720 complex in A549 cells. Various PP2A-associated downstream effector proteins in the presence or absence of FTY720 were then identified by stable isotope labeling with amino cells in cell culture, including tumor suppressor nonmuscle myosin IIA. Attenuation of FTY720-SET association by point mutations of residues that are involved in FTY720 binding or dephosphorylation of SET at Serine 171, enhanced SET oligomerization and the formation of the SET-PP2A inhibitory complex, leading to resistance to FTY720-dependent PP2A activation.-De Palma, R. M., Parnham, S. R., Li, Y., Oaks, J. J., Peterson, Y. K., Szulc, Z. M., Roth, B. M., Xing, Y., Ogretmen, B. The NMR-based characterization of the FTY720-SET complex reveals an alternative mechanism for the attenuation of the inhibitory SET-PP2A interaction.
PMID: 30917007 [PubMed - as supplied by publisher]
A chaperonin protein, GroEL, has a more complex mechanism than was thought before - Phys.Org
A chaperonin protein, GroEL, has a more complex mechanism than was thought before - Phys.Org
A chaperonin protein, GroEL, has a more complex mechanism than was thought before Phys.OrgProteins must fold in a specific way to function. This is often assisted by molecular chaperones—small proteins whose job is to help others fold to the right shape.
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[NMR paper] 1H-NMR-based metabolomics approach reveals metabolic mechanism of (-)-5-hydroxy-equol against hepatocellular carcinoma cells in vitro.
1H-NMR-based metabolomics approach reveals metabolic mechanism of (-)-5-hydroxy-equol against hepatocellular carcinoma cells in vitro.
1H-NMR-based metabolomics approach reveals metabolic mechanism of (-)-5-hydroxy-equol against hepatocellular carcinoma cells in vitro.
J Proteome Res. 2018 Mar 28;:
Authors: Gao L, Wang KX, Zhang NN, Li JQ, Qin XM, Wang XL
Abstract
1H-NMR-based metabolomics can rapidly detect metabolic shift under various stimulus, thus it facilitated the dissection of the therapeutic mechanisms of compounds....
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03-29-2018 07:42 PM
[NMR paper] Model of the Interaction between the NF-?B Inhibitory protein p100 and the E3 ubiquitin ligase ?-TrCP based on NMR and Docking Experiments.
Model of the Interaction between the NF-?B Inhibitory protein p100 and the E3 ubiquitin ligase ?-TrCP based on NMR and Docking Experiments.
Related Articles Model of the Interaction between the NF-?B Inhibitory protein p100 and the E3 ubiquitin ligase ?-TrCP based on NMR and Docking Experiments.
J Chem Inf Model. 2016 Dec 22;:
Authors: Melikian M, Eluard B, Bertho G, Baud V, Evrard-Todeschi N
Abstract
NF-?B is a major transcription factor whose activation is triggered through two main activation pathways: the canonical pathway...
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[NMR paper] Characterization and prediction of the mechanism of action of antibiotics through NMR metabolomics.
Characterization and prediction of the mechanism of action of antibiotics through NMR metabolomics.
Related Articles Characterization and prediction of the mechanism of action of antibiotics through NMR metabolomics.
BMC Microbiol. 2016;16(1):82
Authors: Hoerr V, Duggan GE, Zbytnuik L, Poon KK, Große C, Neugebauer U, Methling K, Löffler B, Vogel HJ
Abstract
BACKGROUND: The emergence of antibiotic resistant pathogenic bacteria has reduced our ability to combat infectious diseases. At the same time the numbers of new antibiotics...
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05-11-2016 08:04 PM
[NMR paper] Solution NMR Studies of an Alternative Mode of Sin3 Engagement by the Sds3 Subunit in the Histone Deacetylase-Associated Sin3L/Rpd3L Corepressor Complex.
Solution NMR Studies of an Alternative Mode of Sin3 Engagement by the Sds3 Subunit in the Histone Deacetylase-Associated Sin3L/Rpd3L Corepressor Complex.
http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Solution NMR Studies of an Alternative Mode of Sin3 Engagement by the Sds3 Subunit in the Histone Deacetylase-Associated Sin3L/Rpd3L Corepressor Complex.
J Mol Biol. 2015 Oct 29;
Authors: Clark MD, Zhang Y, Radhakrishnan I
Abstract
The Sds3...
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NMR analysis of the {alpha}IIb{beta}3 cytoplasmic interaction suggests a mechanism for integrin regulation.
NMR analysis of the {alpha}IIb{beta}3 cytoplasmic interaction suggests a mechanism for integrin regulation.
NMR analysis of the {alpha}IIb{beta}3 cytoplasmic interaction suggests a mechanism for integrin regulation.
Proc Natl Acad Sci U S A. 2010 Dec 14;
Authors: Metcalf DG, Moore DT, Wu Y, Kielec JM, Molnar K, Valentine KG, Wand AJ, Bennett JS, Degrado WF
The integrin ?IIb?3 is a transmembrane (TM) heterodimeric adhesion receptor that exists in equilibrium between resting and active ligand binding conformations. In resting ?IIb?3, the TM and...
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12-16-2010 09:21 PM
[NMR paper] NMR structure reveals intramolecular regulation mechanism for pheromone binding and r
NMR structure reveals intramolecular regulation mechanism for pheromone binding and release.
Related Articles NMR structure reveals intramolecular regulation mechanism for pheromone binding and release.
Proc Natl Acad Sci U S A. 2001 Dec 4;98(25):14374-9
Authors: Horst R, Damberger F, Luginbühl P, Güntert P, Peng G, Nikonova L, Leal WS, Wüthrich K
Odorants are transmitted by small hydrophobic molecules that cross the aqueous sensillar lymph surrounding the dendrites of the olfactory neurons to stimulate the olfactory receptors. In insects, the...
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[NMR paper] 13C NMR evidence for pyruvate kinase flux attenuation underlying suppressed acid form
13C NMR evidence for pyruvate kinase flux attenuation underlying suppressed acid formation in Bacillus subtilis.
Related Articles 13C NMR evidence for pyruvate kinase flux attenuation underlying suppressed acid formation in Bacillus subtilis.
Biotechnol Prog. 2000 Mar-Apr;16(2):169-75
Authors: Phalakornkule C, Fry B, Zhu T, Kopesel R, Ataai MM, Domach MM
When batch and continuous Bacillus subtilis cultures are provided with a small amount of citrate, acid production ceases, carbon yield increases by more than 2-fold, and the productivity of...