NMR paper NMR assignment and solution structure of the external DII domain of the yeast Rvb2 protein.

		BioNMR > Educational resources > Journal club
[NMR paper] NMR assignment and solution structure of the external DII domain of the yeast Rvb2 protein.

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-24-2018, 12:21 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR assignment and solution structure of the external DII domain of the yeast Rvb2 protein.

NMR assignment and solution structure of the external DII domain of the yeast Rvb2 protein.

NMR assignment and solution structure of the external DII domain of the yeast Rvb2 protein.

Biomol NMR Assign. 2018 Mar 22;:

Authors: Bragantini B, Rouillon C, Charpentier B, Manival X, Quinternet M

Abstract
We report the nearly complete 1H, 15N and 13C resonance assignment and the solution structure of the external DII domain of the yeast Rvb2 protein, a member of the AAA+ATPase superfamily.

PMID: 29569106 [PubMed - as supplied by publisher]

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Solution NMR structure of yeast Rcf1, a protein involved in respiratory supercomplex formation [Biophysics and Computational Biology] Solution NMR structure of yeast Rcf1, a protein involved in respiratory supercomplex formation Shu Zhou, Pontus Pettersson, Jingȷing Huang, Johannes Sȷoholm, Dan Sȷostrand, Regis Pomes, Martin Hogbom, Peter Brzezinski, Lena Maler, Pia Adelroth... Date: 2018-03-20 The Saccharomyces cerevisiae respiratory supercomplex factor 1 (Rcf1) protein is located in the mitochondrial inner membrane where it is involved in formation of supercomplexes composed of respiratory complexes III and IV. We report the solution structure of Rcf1, which forms a dimer in...	nmrlearner	Journal club	0	03-20-2018 10:11 PM
[NMR paper] Solution NMR structure of yeast Rcf1, a protein involved in respiratory supercomplex formation. Solution NMR structure of yeast Rcf1, a protein involved in respiratory supercomplex formation. Related Articles Solution NMR structure of yeast Rcf1, a protein involved in respiratory supercomplex formation. Proc Natl Acad Sci U S A. 2018 Mar 05;: Authors: Zhou S, Pettersson P, Huang J, Sjöholm J, Sjöstrand D, Pomès R, Högbom M, Brzezinski P, Mäler L, Ädelroth P Abstract The Saccharomyces cerevisiae respiratory supercomplex factor 1 (Rcf1) protein is located in the mitochondrial inner membrane where it is involved in...	nmrlearner	Journal club	0	03-07-2018 08:27 PM
[NMR paper] (113) Cd NMR Experiments Reveal an Unusual Metal Cluster in the Solution Structure of the Yeast Splicing Protein Bud31p. (113) Cd NMR Experiments Reveal an Unusual Metal Cluster in the Solution Structure of the Yeast Splicing Protein Bud31p. (113) Cd NMR Experiments Reveal an Unusual Metal Cluster in the Solution Structure of the Yeast Splicing Protein Bud31p. Angew Chem Int Ed Engl. 2015 Feb 20; Authors: van Roon AM, Yang JC, Mathieu D, Bermel W, Nagai K, Neuhaus D Abstract Establishing the binding topology of structural zinc ions in proteins is an essential part of their structure determination by NMR spectroscopy. Using (113) Cd NMR experiments...	nmrlearner	Journal club	0	02-24-2015 02:48 PM
[NMR paper] Structural characterization of triple transmembrane domain containing fragments of a yeast G protein-coupled receptor in an organic : aqueous environment by solution-state NMR spectroscopy. Structural characterization of triple transmembrane domain containing fragments of a yeast G protein-coupled receptor in an organic : aqueous environment by solution-state NMR spectroscopy. Related Articles Structural characterization of triple transmembrane domain containing fragments of a yeast G protein-coupled receptor in an organic : aqueous environment by solution-state NMR spectroscopy. J Pept Sci. 2015 Feb 2; Authors: Fracchiolla KE, Cohen LS, Arshava B, Poms M, Zerbe O, Becker JM, Naider F Abstract This report...	nmrlearner	Journal club	0	02-04-2015 09:57 PM
[NMR paper] NMR solution structure of a peptide from the mdm-2 binding domain of the p53 protein NMR solution structure of a peptide from the mdm-2 binding domain of the p53 protein that is selectively cytotoxic to cancer cells. Related Articles NMR solution structure of a peptide from the mdm-2 binding domain of the p53 protein that is selectively cytotoxic to cancer cells. Biochemistry. 2004 Feb 24;43(7):1854-61 Authors: Rosal R, Pincus MR, Brandt-Rauf PW, Fine RL, Michl J, Wang H We have recently found that a peptide from the mdm-2 binding domain of the p53 protein induced rapid membranolytic necrosis of a variety of different human...	nmrlearner	Journal club	0	11-24-2010 09:25 PM
[NMR paper] 1H and 15N NMR assignment and solution structure of the SH3 domain of spectrin: compa 1H and 15N NMR assignment and solution structure of the SH3 domain of spectrin: comparison of unrefined and refined structure sets with the crystal structure. Related Articles 1H and 15N NMR assignment and solution structure of the SH3 domain of spectrin: comparison of unrefined and refined structure sets with the crystal structure. J Biomol NMR. 1997 Jun;9(4):347-57 Authors: Blanco FJ, Ortiz AR, Serrano L The assignment of the 1H and 15N nuclear magnetic resonance spectra of the Src-homology region 3 domain of chicken brain alpha-spectrin has...	nmrlearner	Journal club	0	08-22-2010 03:31 PM
[NMR paper] 1H and 15N NMR assignment and solution structure of the SH3 domain of spectrin: compa 1H and 15N NMR assignment and solution structure of the SH3 domain of spectrin: comparison of unrefined and refined structure sets with the crystal structure. Related Articles 1H and 15N NMR assignment and solution structure of the SH3 domain of spectrin: comparison of unrefined and refined structure sets with the crystal structure. J Biomol NMR. 1997 Jun;9(4):347-57 Authors: Blanco FJ, Ortiz AR, Serrano L The assignment of the 1H and 15N nuclear magnetic resonance spectra of the Src-homology region 3 domain of chicken brain alpha-spectrin has...	nmrlearner	Journal club	0	08-22-2010 03:03 PM
[NMR paper] Secondary structure of the homeo domain of yeast alpha 2 repressor determined by NMR Secondary structure of the homeo domain of yeast alpha 2 repressor determined by NMR spectroscopy. Related Articles Secondary structure of the homeo domain of yeast alpha 2 repressor determined by NMR spectroscopy. Genes Dev. 1991 May;5(5):764-72 Authors: Phillips CL, Vershon AK, Johnson AD, Dahlquist FW The yeast alpha 2 protein is a regulator of cell type in Saccharomyces cerevisiae. It represses transcription of a set of target genes by binding to an operator located upstream of each of these genes. The alpha 2 protein shares weak sequence...	nmrlearner	Journal club	0	08-21-2010 11:16 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off