Related ArticlesAn NMR assignment module implemented in the Gifa NMR processing program.
Bioinformatics. 1998;14(7):624-31
Authors: Malliavin TE, Pons JL, Delsuc MA
MOTIVATION: Peptide and protein structures are determined daily using NMR spectroscopy. Assignment of the NMR spectra is an important step within the procedure and is usually the limiting one. Computer-aided assignment tools should be user friendly with open architecture to communicate with other programs involved in the structure determination. RESULTS: Here we present an interactive NMR assignment module which provides numerous graphic tools for the user. The module is composed of a database management system-handling peaks, spins and spin-systems. The assignment information is maintained as a set of interrelated associative arrays, which serve as generic high-level data structures. The module is developed in the macro language embedded in the Gifa NMR processing program (Pons et al. , J. Biomol. NMR, 8 , 445-452, 1996). This provides the user with a consistent interface, a set of sophisticated tools, and an easily extendible and customizable environment. AVAILABILITY: The program is available on request from the authors. The Gifa package can be accessed at: ((http://www.cbs. univ-montp1.fr/GIFA)) CONTACT: Marc-Andre.Delsuc@cbs.univ-montp1.fr
Al NMR: a novel NMR data processing program optimized for sparse sampling
Al NMR: a novel NMR data processing program optimized for sparse sampling
Abstract Sparse sampling in biomolecular multidimensional NMR offers increased acquisition speed and resolution and, if appropriate conditions are met, an increase in sensitivity. Sparse sampling of indirectly detected time domains combined with the direct truly multidimensional Fourier transform has elicited particular attention because of the ability to generate a final spectrum amenable to traditional analysis techniques. A number of sparse sampling schemes have been described including radial sampling, random...
nmrlearner
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11-17-2011 01:47 AM
AssignFit: a program for simultaneous assignment and structure refinement from solid-state NMR spectra
AssignFit: a program for simultaneous assignment and structure refinement from solid-state NMR spectra
Publication year: 2011
Source: Journal of Magnetic Resonance, Available online 8 October 2011</br>
Ye*Tian, Charles D.*Schwieters, Stanley J.*Opella, Francesca M.*Marassi</br>
AssignFit is a computer program developed within the XPLOR-NIH package for the assignment of dipolar coupling (DC) and chemical shift anisotropy (CSA) restraints derived from the solid-state NMR spectra of protein samples with uniaxial order. The method is based on minimizing the difference between...
nmrlearner
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10-10-2011 06:27 AM
[NMR paper] Ansig for Windows: an interactive computer program for semiautomatic assignment of pr
Ansig for Windows: an interactive computer program for semiautomatic assignment of protein NMR spectra.
Related Articles Ansig for Windows: an interactive computer program for semiautomatic assignment of protein NMR spectra.
J Biomol NMR. 2000 Dec;18(4):329-36
Authors: Helgstrand M, Kraulis P, Allard P, Härd T
Assignment of NMR spectra is a prerequisite for structure determination of proteins using NMR. The time spent on the assignment is comparatively long compared to that spent on other parts in the protein structure determination process,...
nmrlearner
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11-19-2010 08:29 PM
[NMR paper] 1H NMR assignment and secondary structure of the cell adhesion type III module of fib
1H NMR assignment and secondary structure of the cell adhesion type III module of fibronectin.
Related Articles 1H NMR assignment and secondary structure of the cell adhesion type III module of fibronectin.
Biochemistry. 1992 Feb 25;31(7):2068-73
Authors: Baron M, Main AL, Driscoll PC, Mardon HJ, Boyd J, Campbell ID
The secondary structure of the tenth type III module from human fibronectin has been determined using NMR. This type of module appears many times in a wide variety of proteins. The type III module described here contains an...
nmrlearner
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08-21-2010 11:41 PM
what is the best program for assignment?
Hi I'm a student who would like to know which is the best program for assignment, (CARA?) in particulary one which is very easy to use. thanx!!! :confused:
Gianlu83
NMR software
2
02-09-2009 11:30 AM
MONTE: a program for automated NMR assignment
MONTE: An automated Monte Carlo based approach to nuclear magnetic resonance assignment of proteins.
Hitchens TK, Lukin JA, Zhan Y, McCallum SA, Rule GS.
Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.
J Biomol NMR. 2003 Jan;25(1):1-9.
http://www.bionmr.com/forum/style_images/monte.gif
Monte website
nmrlearner
NMR software
0
07-17-2005 03:04 AM
CARA: a new program for NMR assignment
The following message was posted by damberge on old PostNuke of Bionmr.com
"CARA is a new program being developed at the ETH for computer-aided resonance assignment. It has dedicated tools along with a well organized database which allow for efficient assignment. A scripting language and many user scripts are available (including one to automate assignments). All major platforms are available (Windows, Linux, Mac, SGI, Sun) and it is free. It can be downloaded at:
www.nmr.ch "
An NMR assignment module implemented in the Gifa NMR processing program.
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