NMR paper NMR assignment of the barnacle cement protein mrcp-20k.

		BioNMR > Educational resources > Journal club
[NMR paper] NMR assignment of the barnacle cement protein mrcp-20k.

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

12-01-2010, 06:56 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR assignment of the barnacle cement protein mrcp-20k.

NMR assignment of the barnacle cement protein mrcp-20k.

Related Articles NMR assignment of the barnacle cement protein mrcp-20k.

J Biomol NMR. 2005 Jul;32(3):257

Authors: Suzuki R, Mori Y, Kamino K, Yamazaki T

PMID: 16132826 [PubMed - indexed for MEDLINE]

Source: PubMed

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Protein side-chain resonance assignment and NOE assignment using RDC-defined backbones without TOCSY data Protein side-chain resonance assignment and NOE assignment using RDC-defined backbones without TOCSY data Abstract One bottleneck in NMR structure determination lies in the laborious and time-consuming process of side-chain resonance and NOE assignments. Compared to the well-studied backbone resonance assignment problem, automated side-chain resonance and NOE assignments are relatively less explored. Most NOE assignment algorithms require nearly complete side-chain resonance assignments from a series of through-bond experiments such as HCCH-TOCSY or HCCCONH. Unfortunately, these TOCSY...	nmrlearner	Journal club	0	06-27-2011 04:30 AM
[Question from NMRWiki Q&A forum] assignment of 12 kd protein assignment of 12 kd protein Dear memers ! I encountering problem with assignment of 12 kd protein ! i assigend already 50 percent of backbone using HNCA, HNCOCA CBCANH and CBCACONH , still some peaks are not quality of cbcanh and cbcaconh . how to assign rest of them using other experments ( HCCONH, HBHACONH ,CCCONH ) ?iam using sparky , vnmrj 700 mhz thanking you anticipation Check if somebody has answered this question on NMRWiki QA forum	nmrlearner	News from other NMR forums	0	05-10-2011 07:17 PM
[NMR images] of protein NMR assignment http://www.protein-nmr.org.uk/pictures/index/protein2.png protein-nmr.org.uk 9/02/2011 8:21:55 AM GMT of protein NMR assignment More...	nmrlearner	NMR pictures	0	03-21-2011 07:27 PM
[NMR paper] 1H-, 13C- and 15N-NMR assignment of the conserved hypothetical protein TM0487 from Th 1H-, 13C- and 15N-NMR assignment of the conserved hypothetical protein TM0487 from Thermotoga maritima. Related Articles 1H-, 13C- and 15N-NMR assignment of the conserved hypothetical protein TM0487 from Thermotoga maritima. J Biomol NMR. 2004 Jul;29(3):453-4 Authors: Almeida MS, Peti W, Wüthrich K	nmrlearner	Journal club	0	11-24-2010 09:51 PM
[NMR900 blog] Opportunities for studying polymorphs and cement-based materials via Ca-43 solid-stat Opportunities for studying polymorphs and cement-based materials via Ca-43 solid-state NMR June 11, 2010, University of Ottawa Calcium is an important component in diverse materials and biochemicals. However, NMR spectroscopy of the only spin-active calcium isotope, Ca-43, is notoriously challenging due to its low natural abundance (0.14 %), low resonance frequency, and quadrupolar nature. Recently, researchers from the University of Ottawa, the NRC Steacie Institute for Molecular Sciences (SIMS-NRC), and Dalhousie University have independently reported advances in studies of inorganic...	nmrlearner	News from NMR blogs	0	08-22-2010 02:30 AM
[NMR900 blog] Opportunities for studying polymorphs and cement-based materials via Ca-43 solid-stat Opportunities for studying polymorphs and cement-based materials via Ca-43 solid-state NMR June 11, 2010, University of Ottawa Calcium is an important component in diverse materials and biochemicals. However, NMR spectroscopy of the only spin-active calcium isotope, Ca-43, is notoriously challenging due to its low natural abundance (0.14 %), low resonance frequency, and quadrupolar nature. Recently, researchers from the University of Ottawa, the NRC Steacie Institute for Molecular Sciences (SIMS-NRC), and Dalhousie University have independently reported advances in studies of inorganic...	nmrlearner	News from NMR blogs	0	08-22-2010 02:18 AM
[Nature network NMR forum] Practical guide to protein NMR assignment (1 reply) Practical guide to protein NMR assignment (1 reply) There is a new website guiding new spectroscopists through the basics of assigning their favorite protein – click here More...	nmrlearner	News from other NMR forums	0	08-21-2010 03:29 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off