NMR paper NMR Analysis of Protein Folding Interaction Networks

		BioNMR > Educational resources > Journal club
[NMR paper] NMR Analysis of Protein Folding Interaction Networks

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

12-01-2021, 02:07 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR Analysis of Protein Folding Interaction Networks

NMR Analysis of Protein Folding Interaction Networks

Theory and experimental evidence unequivocally indicate that protein folding is far more complex than the two-state (all-or-none) model that is usually assumed in the analysis of folding experiments. Proteins tend to fold hierarchically by forming secondary structure elements, followed by supersecondary arrangements, and other intermediate states that ultimately adopt the native tertiary fold as a result of a delicate balance between interatomic interactions and entropic contributions. However,...

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Differential Refractometer for Polymer and Protein Analysis - Technology Networks Differential Refractometer for Polymer and Protein Analysis - Technology Networks Differential Refractometer for Polymer and Protein Analysis Technology Networks Read here	nmrlearner	Online News	0	04-01-2021 11:57 AM
Triple Threat for Protein Complex Analysis - Technology Networks Triple Threat for Protein Complex Analysis - Technology Networks Triple Threat for Protein Complex Analysis Technology Networks Read here	nmrlearner	Online News	0	05-24-2020 07:56 PM
Three Definitely Isn't a Crowd When It Comes to Protein Complex Analysis - Technology Networks Three Definitely Isn't a Crowd When It Comes to Protein Complex Analysis - Technology Networks Three Definitely Isn't a Crowd When It Comes to Protein Complex Analysis Technology Networks Read here	nmrlearner	Online News	0	05-12-2020 08:32 PM
Triple Threat for Protein Complex Analysis - Technology Networks Triple Threat for Protein Complex Analysis - Technology Networks Triple Threat for Protein Complex Analysis Technology Networks Read here	nmrlearner	Online News	0	04-22-2020 12:05 AM
QTY Code Simplifies Membrane Protein Analysis - Technology Networks QTY Code Simplifies Membrane Protein Analysis - Technology Networks QTY Code Simplifies Membrane Protein Analysis Technology NetworksTechnology Networks is an internationally recognised publisher that provides access to the latest scientific news, products, research, videos and posters. Read here	nmrlearner	Online News	0	04-04-2019 09:40 AM
QTY Code Simplifies Membrane Protein Analysis - Technology Networks QTY Code Simplifies Membrane Protein Analysis - Technology Networks QTY Code Simplifies Membrane Protein Analysis Technology NetworksNews Aug 29, 2018 \| Original Press Release from MIT. QTY Code Simplifies Membrane Protein Analysis. Postdoc Rui Qing and Principal Research Scientist ... Read here	nmrlearner	Online News	0	01-07-2019 05:49 AM
[NMR paper] Initiation sites of protein folding by NMR analysis. Initiation sites of protein folding by NMR analysis. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Initiation sites of protein folding by NMR analysis. Proc Natl Acad Sci U S A. 1996 Oct 1;93(20):10600-3 Authors: Freund SM, Wong KB, Fersht AR Detailed characterization of denatured states of proteins is necessary to understand the interactions that funnel the large number of possible conformations along fast routes for folding. Nuclear magnetic resonance...	nmrlearner	Journal club	0	08-22-2010 02:20 PM
[NMR paper] Dynamic NMR spectral analysis and protein folding: identification of a highly populat Dynamic NMR spectral analysis and protein folding: identification of a highly populated folding intermediate of rat intestinal fatty acid-binding protein by 19F NMR. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Dynamic NMR spectral analysis and protein folding: identification of a highly populated folding intermediate of rat intestinal fatty acid-binding protein by 19F NMR. Proc Natl Acad Sci U S A. 1992 Aug 1;89(15):7222-6 Authors: Ropson IJ, Frieden C ...	nmrlearner	Journal club	0	08-21-2010 11:45 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off