Messenger RNA is recruited to the eukaryotic ribosome by a complex including the eukaryotic initiation factor (eIF) 4E (the cap-binding protein), the scaffold protein eIF4G and the RNA helicase eIF4A. To shut off host-cell protein synthesis, eIF4G is cleaved during picornaviral infection by a virally encoded proteinase; the structural basis of this reaction and its stimulation by eIF4E is unclear. We have structurally and biochemically investigated the interaction of purified foot-and-mouth disease virus (FMDV) leader proteinase (Lbpro), human rhinovirus 2 (HRV2) 2A proteinase (2Apro) and coxsackievirus B4 (CVB4) 2Apro with purified eIF4GII, eIF4E and the eIF4GII/eIF4E complex. Using nuclear magnetic resonance (NMR), we completed 13C/15N sequential backbone assignment of human eIF4GII residues 551 to 745 and examined their binding to murine eIF4E. eIF4GII551-745 is intrinsically unstructured and remains so when bound to eIF4E. NMR and biophysical techniques for determining stoichiometry and binding constants revealed that the papain-like Lbpro only forms a stable complex with eIF4GII551-745 in the presence of eIF4E, with KD values in the low nanomolar range; Lbpro contacts both eIF4GII and eIF4E. Furthermore, the unrelated chymotrypsin-like 2Apro from HRV2 and CVB4 also build a stable complex with eIF4GII/eIF4E, but with KD values in the low micromolar range. The HRV2 enzyme also forms a stable complex with eIF4E; however, none of the proteinases tested complex stably with eIF4GII alone. Thus, these three picornaviral proteinases have independently evolved to establish distinct triangular heterotrimeric protein complexes that may actively target ribosomes involved in mRNA recruitment to ensure efficient host cell shut-off. This article is protected by copyright. All rights reserved.
[NMR paper] NMR structure of human restriction factor APOBEC3A reveals substrate binding and enzyme specificity.
NMR structure of human restriction factor APOBEC3A reveals substrate binding and enzyme specificity.
Related Articles NMR structure of human restriction factor APOBEC3A reveals substrate binding and enzyme specificity.
Nat Commun. 2013;4:1890
Authors: Byeon IJ, Ahn J, Mitra M, Byeon CH, Hercík K, Hritz J, Charlton LM, Levin JG, Gronenborn AM
Abstract
Human APOBEC3A is a single-stranded DNA cytidine deaminase that restricts viral pathogens and endogenous retrotransposons, and has a role in the innate immune response. Furthermore, its...
nmrlearner
Journal club
0
05-23-2013 06:54 PM
[NMR paper] Interaction of the eukaryotic pore-forming cytolysin equinatoxin II with model membra
Interaction of the eukaryotic pore-forming cytolysin equinatoxin II with model membranes: 19F NMR studies.
Related Articles Interaction of the eukaryotic pore-forming cytolysin equinatoxin II with model membranes: 19F NMR studies.
J Mol Biol. 2005 Mar 18;347(1):27-39
Authors: Anderluh G, Razpotnik A, Podlesek Z, Macek P, Separovic F, Norton RS
Sea anemones produce a family of 18-20 kDa proteins, the actinoporins, which lyse cells by forming pores in cell membranes. Sphingomyelin plays an important role in their lytic activity, with membranes...
nmrlearner
Journal club
0
11-24-2010 11:14 PM
[NMR paper] Structure and dynamics of translation initiation factor aIF-1A from the archaeon Meth
Structure and dynamics of translation initiation factor aIF-1A from the archaeon Methanococcus jannaschii determined by NMR spectroscopy.
Related Articles Structure and dynamics of translation initiation factor aIF-1A from the archaeon Methanococcus jannaschii determined by NMR spectroscopy.
Protein Sci. 2001 Dec;10(12):2426-38
Authors: Li W, Hoffman DW
Translation initiation factor 1A (aIF-1A) from the archaeon Methanococcus jannaschii was expressed in Escherichia coli, purified, and characterized in terms of its structure and dynamics using...
nmrlearner
Journal club
0
11-19-2010 08:44 PM
[NMR paper] NMR analysis of intra- and inter-molecular stems in the dimerization initiation site
NMR analysis of intra- and inter-molecular stems in the dimerization initiation site of the HIV-1 genome.
Related Articles NMR analysis of intra- and inter-molecular stems in the dimerization initiation site of the HIV-1 genome.
J Biochem. 2000 Apr;127(4):681-6
Authors: Takahashi K, Baba S, Hayashi Y, Koyanagi Y, Yamamoto N, Takaku H, Kawai G
Two positive-strand HIV-1 genomic RNAs form a dimer in virion particles through interaction of the dimerization initiation sites (DIS). The DIS RNA fragment spontaneously formed a "loose-dimer" and was...
nmrlearner
Journal club
0
11-18-2010 09:15 PM
[NMR paper] Heteronuclear NMR studies of E. coli translation initiation factor IF3. Evidence that
Heteronuclear NMR studies of E. coli translation initiation factor IF3. Evidence that the inter-domain region is disordered in solution.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Heteronuclear NMR studies of E. coli translation initiation factor IF3. Evidence that the inter-domain region is disordered in solution.
J Mol Biol. 1997 Feb 14;266(1):15-22
Authors: Moreau M, de Cock E, Fortier PL, Garcia C, Albaret C, Blanquet S, Lallemand JY, Dardel F
Initiation...
nmrlearner
Journal club
0
08-22-2010 03:31 PM
[NMR paper] Heteronuclear NMR studies of E. coli translation initiation factor IF3. Evidence that
Heteronuclear NMR studies of E. coli translation initiation factor IF3. Evidence that the inter-domain region is disordered in solution.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Heteronuclear NMR studies of E. coli translation initiation factor IF3. Evidence that the inter-domain region is disordered in solution.
J Mol Biol. 1997 Feb 14;266(1):15-22
Authors: Moreau M, de Cock E, Fortier PL, Garcia C, Albaret C, Blanquet S, Lallemand JY, Dardel F
Initiation...
nmrlearner
Journal club
0
08-22-2010 03:03 PM
[NMR paper] Initiation sites of protein folding by NMR analysis.
Initiation sites of protein folding by NMR analysis.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Initiation sites of protein folding by NMR analysis.
Proc Natl Acad Sci U S A. 1996 Oct 1;93(20):10600-3
Authors: Freund SM, Wong KB, Fersht AR
Detailed characterization of denatured states of proteins is necessary to understand the interactions that funnel the large number of possible conformations along fast routes for folding. Nuclear magnetic resonance...
nmrlearner
Journal club
0
08-22-2010 02:20 PM
[NMR paper] Identification of the ribosome binding sites of translation initiation factor IF3 by
Identification of the ribosome binding sites of translation initiation factor IF3 by multidimensional heteronuclear NMR spectroscopy.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Identification of the ribosome binding sites of translation initiation factor IF3 by multidimensional heteronuclear NMR spectroscopy.
RNA. 1999 Jan;5(1):82-92
Authors: Sette M, Spurio R, van Tilborg P, Gualerzi CO, Boelens R
Titrations of Escherichia coli translation initiation...