NMR paper Mutual Dependence between Membrane Phase Separation and Bacterial Division Protein Dynamics in Synthetic Cell Models

		BioNMR > Educational resources > Journal club
[NMR paper] Mutual Dependence between Membrane Phase Separation and Bacterial Division Protein Dynamics in Synthetic Cell Models

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

12-03-2024, 09:10 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,778

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Mutual Dependence between Membrane Phase Separation and Bacterial Division Protein Dynamics in Synthetic Cell Models

Mutual Dependence between Membrane Phase Separation and Bacterial Division Protein Dynamics in Synthetic Cell Models

Angewandte Chemie International Edition, Accepted Article.

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Direct observation of structure and dynamics during phase separation of an elastomeric protein - pnas.org Direct observation of structure and dynamics during phase separation of an elastomeric protein - pnas.org Direct observation of structure and dynamics during phase separation of an elastomeric protein pnas.org Read here	nmrlearner	Online News	0	09-22-2024 05:30 PM
Direct observation of structure and dynamics during phase separation of an elastomeric protein - pnas.org Direct observation of structure and dynamics during phase separation of an elastomeric protein - pnas.org Direct observation of structure and dynamics during phase separation of an elastomeric protein pnas.org Read here	nmrlearner	Online News	0	08-01-2024 05:54 PM
Direct observation of structure and dynamics during phase separation of an elastomeric protein \| Proceedings of the ... - pnas.org Direct observation of structure and dynamics during phase separation of an elastomeric protein \| Proceedings of the ... - pnas.org Direct observation of structure and dynamics during phase separation of an elastomeric protein \| Proceedings of the ... pnas.org Read here	nmrlearner	Online News	0	02-22-2024 06:01 PM
Direct observation of structure and dynamics during phase separation of an elastomeric protein \| Proceedings of the ... - pnas.org Direct observation of structure and dynamics during phase separation of an elastomeric protein \| Proceedings of the ... - pnas.org Direct observation of structure and dynamics during phase separation of an elastomeric protein \| Proceedings of the ... pnas.org Read here	nmrlearner	Online News	0	02-15-2024 07:41 AM
[ASAP] Lipid Surfaces and Glutamate Anions Enhance Formation of Dynamic Biomolecular Condensates Containing Bacterial Cell Division Protein FtsZ and Its DNA-Bound Regulator SlmA Lipid Surfaces and Glutamate Anions Enhance Formation of Dynamic Biomolecular Condensates Containing Bacterial Cell Division Protein FtsZ and Its DNA-Bound Regulator SlmA https://pubs.acs.org/cms/10.1021/acs.biochem.2c00424/asset/images/medium/bi2c00424_0001.gif Biochemistry DOI: 10.1021/acs.biochem.2c00424 More...	nmrlearner	Journal club	0	11-02-2022 11:54 AM
[ASAP] Phase Separation in Cell Polarity Published as part of the Biochemistry virtual special issue “Protein Condensates” Phase Separation in Cell Polarity Published as part of the Biochemistry virtual special issue “Protein Condensates” https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.1c00372/20210830/images/medium/bi1c00372_0004.gif Biochemistry DOI: 10.1021/acs.biochem.1c00372 http://feeds.feedburner.com/~r/acs/bichaw/~4/tYWQHlSVNws More...	nmrlearner	Journal club	0	08-31-2021 10:53 AM
Interactionsof Bacterial Cell Division Protein FtsZwith C8-Substituted Guanine Nucleotide Inhibitors. A Combined NMR,Biochemical and Molecular Modeling Perspective Interactionsof Bacterial Cell Division Protein FtsZwith C8-Substituted Guanine Nucleotide Inhibitors. A Combined NMR,Biochemical and Molecular Modeling Perspective Filipa Marcelo, Sonia Huecas, Laura B. Ruiz-A?vila, F. Javier Can?ada, Almudena Perona, Ana Poveda, Sonsoles Marti?n-Santamari?a, Antonio Morreale, Jesu?s Jime?nez-Barbero and Jose? M. Andreu http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja405515r/aop/images/medium/ja-2013-05515r_0010.gif Journal of the American Chemical Society DOI: 10.1021/ja405515r...	nmrlearner	Journal club	0	10-24-2013 08:45 PM
[NMR paper] Interactions of bacterial cell division protein FtsZ with C8-substituted guanine nucleotide inhibitors. A combined NMR, biochemical and molecular modeling perspective. Interactions of bacterial cell division protein FtsZ with C8-substituted guanine nucleotide inhibitors. A combined NMR, biochemical and molecular modeling perspective. Interactions of bacterial cell division protein FtsZ with C8-substituted guanine nucleotide inhibitors. A combined NMR, biochemical and molecular modeling perspective. J Am Chem Soc. 2013 Sep 30; Authors: Marcelo F, Huecas S, Ruiz-Avila LB, Cañada FJ, Perona A, Poveda A, Martin-Santamaria S, Morreale A, Jimenez-Barbero J, Andreu JM Abstract FtsZ is the key protein of...	nmrlearner	Journal club	0	10-02-2013 11:18 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off