Journal of the American Chemical Society (2012). Eriks Kupce, Ray Freeman et al.
We propose a new general form of two-dimensional spectroscopy where the indirect 'evolution' dimension is derived using the Radon transform. This idea is applicable to several types of spectroscopy but is illustrated here for the case of NMR. This 'projection spectroscopy' displays characteristic correlation peaks that highlight perturbations of chemical shifts caused by temperature, pressure, solvent, molecular binding, chemical exchange, hydrogen-bonding, pH variations, conformational changes, or paramagnetic agents. The result is displayed in a convenient format that allows the chemist to see all the chemical shift perturbations at a glance, and assess their rates of change and directions. As proof of principle, two simple practical examples are presented that display two-dimensional representations of the temperature and solvent effects on NMR spectra.
Mapping the Landscape of RNA Dynamics with NMR Spectroscopy.
Mapping the Landscape of RNA Dynamics with NMR Spectroscopy.
Mapping the Landscape of RNA Dynamics with NMR Spectroscopy.
Acc Chem Res. 2011 Sep 6;
Authors: Rinnenthal J, Buck J, Ferner J, Wacker A, Fu?rtig B, Schwalbe H
Abstract
Among the three major classes of biomacromolecules (DNA, RNA, and proteins) RNA's pronounced dynamics are the most explicitly linked to its wide variety of functions, which include catalysis and the regulation of transcription, translation, and splicing. These functions are mediated by a range of RNA...
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09-08-2011 06:50 PM
Pulsed Pressure Perturbations, an Extra Dimension in NMR Spectroscopy of Proteins
Pulsed Pressure Perturbations, an Extra Dimension in NMR Spectroscopy of Proteins
Werner Kremer, Martin Arnold, Claudia Elisabeth Munte, Rainer Hartl, Markus Beck Erlach, Joerg Koehler, Alexander Meier and Hans Robert Kalbitzer
http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja2050698/aop/images/medium/ja-2011-050698_0003.gif
Journal of the American Chemical Society
DOI: 10.1021/ja2050698
http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA
http://feeds.feedburner.com/~r/acs/jacsat/~4/zlQj5rBkfDs
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08-11-2011 02:24 AM
Pulsed Pressure Perturbations, an Extra Dimension in NMR Spectroscopy of Proteins.
Pulsed Pressure Perturbations, an Extra Dimension in NMR Spectroscopy of Proteins.
Pulsed Pressure Perturbations, an Extra Dimension in NMR Spectroscopy of Proteins.
J Am Chem Soc. 2011 Jul 21;
Authors: Kremer W, Arnold M, Munte CE, Hartl R, Beck Erlach M, Koehler J, Meier A, Kalbitzer HR
The introduction of the multidimensional NMR spectroscopy was a breakthrough in biological NMR me-thodology since it allowed the unequivocal correlation of different spin states of the system. The introduction of large pressure perturbations in the corresponding...
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07-23-2011 08:54 AM
[NMR paper] Probing conformational disorder in neurotensin by two-dimensional solid-state NMR and comparison to molecular dynamics simulations.
Probing conformational disorder in neurotensin by two-dimensional solid-state NMR and comparison to molecular dynamics simulations.
Related Articles Probing conformational disorder in neurotensin by two-dimensional solid-state NMR and comparison to molecular dynamics simulations.
Biophys J. 2005 Sep;89(3):2113-20
Authors: Heise H, Luca S, de Groot BL, Grubmüller H, Baldus M
An approach is introduced to characterize conformational ensembles of intrinsically unstructured peptides on the atomic level using two-dimensional solid-state NMR data and...
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12-01-2010 06:56 PM
[NMR paper] TIMP-1 contact sites and perturbations of stromelysin 1 mapped by NMR and a paramagne
TIMP-1 contact sites and perturbations of stromelysin 1 mapped by NMR and a paramagnetic surface probe.
Related Articles TIMP-1 contact sites and perturbations of stromelysin 1 mapped by NMR and a paramagnetic surface probe.
Biochemistry. 1998 Jul 7;37(27):9650-7
Authors: Arumugam S, Hemme CL, Yoshida N, Suzuki K, Nagase H, Berjanskii M, Wu B, Van Doren SR
Surfaces of the 173 residue catalytic domain of human matrix metalloproteinase 3 (MMP-3(DeltaC)) affected by binding of the N-terminal, 126 residue inhibitory domain of human TIMP-1...
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11-17-2010 11:15 PM
Mapping the encounter state of a transient protein complex by PRE NMR spectroscopy
Mapping the encounter state of a transient protein complex by PRE NMR spectroscopy
Abstract Many biomolecular interactions proceed via a short-lived encounter state, consisting of multiple, lowly-populated species invisible to most experimental techniques. Recent development of paramagnetic relaxation enhancement (PRE) nuclear magnetic resonance (NMR) spectroscopy has allowed to directly visualize such transient intermediates in a number of protein-protein and protein-DNA complexes. Here we present an analysis of the recently published PRE NMR data for a protein complex of yeast...
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11-06-2010 01:24 PM
Mapping the encounter state of a transient protein complex by PRE NMR spectroscopy.
Mapping the encounter state of a transient protein complex by PRE NMR spectroscopy.
Mapping the encounter state of a transient protein complex by PRE NMR spectroscopy.
J Biomol NMR. 2010 Nov 4;
Authors: Volkov AN, Ubbink M, van Nuland NA
Many biomolecular interactions proceed via a short-lived encounter state, consisting of multiple, lowly-populated species invisible to most experimental techniques. Recent development of paramagnetic relaxation enhancement (PRE) nuclear magnetic resonance (NMR) spectroscopy has allowed to directly visualize such...
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11-05-2010 10:01 AM
Mapping structural interactions using in-cell NMR spectroscopy (STINT-NMR)
Mapping structural interactions using in-cell NMR spectroscopy (STINT-NMR)
David S Burz, Kaushik Dutta, David Cowburn & Alexander Shekhtman
We describe a high-throughput in-cell nuclear magnetic resonance (NMR)-based method for mapping the structural changes that accompany protein-protein interactions (STINT-NMR). The method entails sequentially expressing two (or more) proteins within a single bacterial cell in a time-controlled manner and monitoring the protein interactions using in-cell NMR spectroscopy. The resulting spectra provide a complete titration of the interaction and define...