NMR paper Letters to the Editor: NMR assignment of the chicken prion protein fragments chPrP(12

		BioNMR > Educational resources > Journal club
[NMR paper] Letters to the Editor: NMR assignment of the chicken prion protein fragments chPrP(12

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

11-24-2010, 10:01 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,733

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Letters to the Editor: NMR assignment of the chicken prion protein fragments chPrP(12

Letters to the Editor: NMR assignment of the chicken prion protein fragments chPrP(128-242) and chPrP(25-242) / NMR assignment of the turtle prion protein fragment tPrP(121-225).

Letters to the Editor: NMR assignment of the chicken prion protein fragments chPrP(128-242) and chPrP(25-242) / NMR assignment of the turtle prion protein fragment tPrP(121-225).

J Biomol NMR. 2004 Sep;30(1):97

Authors:

PMID: 21076906 [PubMed - as supplied by publisher]

Source: PubMed

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Toward the Molecular Basis of Inherited Prion Diseases: NMR Structure of the Human Prion Protein with V210I Mutation. Toward the Molecular Basis of Inherited Prion Diseases: NMR Structure of the Human Prion Protein with V210I Mutation. Toward the Molecular Basis of Inherited Prion Diseases: NMR Structure of the Human Prion Protein with V210I Mutation. J Mol Biol. 2011 Aug 4; Authors: Biljan I, Ilc G, Giachin G, Raspadori A, Zhukov I, Plavec J, Legname G The development of transmissible spongiform encephalopathies (TSEs) is associated with the conversion of the cellular prion protein (PrP(C)) into a misfolded, pathogenic isoform (PrP(Sc)). Spontaneous generation...	nmrlearner	Journal club	0	08-16-2011 01:19 PM
[NMR paper] NMR assignment of the Xenopus laevis prion protein fragment xlPrP (98-226). NMR assignment of the Xenopus laevis prion protein fragment xlPrP (98-226). Related Articles NMR assignment of the Xenopus laevis prion protein fragment xlPrP (98-226). J Biomol NMR. 2005 Mar;31(3):260 Authors: Pérez DR, Wüthrich K	nmrlearner	Journal club	0	11-24-2010 11:14 PM
[NMR paper] NMR assignment of the turtle prion protein fragment tPrP(121-225). NMR assignment of the turtle prion protein fragment tPrP(121-225). Related Articles NMR assignment of the turtle prion protein fragment tPrP(121-225). J Biomol NMR. 2004 Sep;30(1):97 Authors: Calzolai L, Lysek DA, Wüthrich K	nmrlearner	Journal club	0	11-24-2010 10:01 PM
[NMR paper] NMR assignment of the chicken prion protein fragments chPrP(128-242) and chPrP(25-242 NMR assignment of the chicken prion protein fragments chPrP(128-242) and chPrP(25-242). Related Articles NMR assignment of the chicken prion protein fragments chPrP(128-242) and chPrP(25-242). J Biomol NMR. 2004 Sep;30(1):97 Authors: Lysek DA, Calzolai L, Wüthrich K	nmrlearner	Journal club	0	11-24-2010 10:01 PM
[NMR paper] Prion protein fragments spanning helix 1 and both strands of beta sheet (residues 125 Prion protein fragments spanning helix 1 and both strands of beta sheet (residues 125-170) show evidence for predominantly helical propensity by CD and NMR. Related Articles Prion protein fragments spanning helix 1 and both strands of beta sheet (residues 125-170) show evidence for predominantly helical propensity by CD and NMR. Fold Des. 1998;3(5):313-20 Authors: Sharman GJ, Kenward N, Williams HE, Landon M, Mayer RJ, Searle MS BACKGROUND: Transmissible spongiform encephalopathies are a group of neurodegenerative disorders of man and animals...	nmrlearner	Journal club	0	11-17-2010 11:06 PM
[NMR paper] Prion protein NMR structure and species barrier for prion diseases. Prion protein NMR structure and species barrier for prion diseases. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--highwire.stanford.edu-icons-externalservices-pubmed-custom-pnas_full_free.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Prion protein NMR structure and species barrier for prion diseases. Proc Natl Acad Sci U S A. 1997 Jul 8;94(14):7281-5 Authors: Billeter M, Riek R, Wider G, Hornemann S, Glockshuber R, WÃ¼thrich K The structural...	nmrlearner	Journal club	0	08-22-2010 05:08 PM
[NMR paper] 13C NMR studies of protein motional dynamics in bovine, human, rat, and chicken ocula 13C NMR studies of protein motional dynamics in bovine, human, rat, and chicken ocular lenses. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles 13C NMR studies of protein motional dynamics in bovine, human, rat, and chicken ocular lenses. Exp Eye Res. 1993 Mar;56(3):305-16 Authors: Rydzewski JM, Wang SX, Stevens A, Serdahl C, Schleich T The motional dynamics of lens proteins were studied by two 13C nuclear magnetic resonance (NMR) techniques sensitive to molecular...	nmrlearner	Journal club	0	08-21-2010 11:53 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off