Joint neutron crystallographic and NMR solution studies of Tyr residue ionization and hydrogen bonding: Implications for enzyme-mediated proton transfer.
Related ArticlesJoint neutron crystallographic and NMR solution studies of Tyr residue ionization and hydrogen bonding: Implications for enzyme-mediated proton transfer.
Proc Natl Acad Sci U S A. 2015 May 5;112(18):5673-8
Abstract
Human carbonic anhydrase II (HCA II) uses a Zn-bound OH(-)/H2O mechanism to catalyze the reversible hydration of CO2. This catalysis also involves a separate proton transfer step, mediated by an ordered solvent network coordinated by hydrophilic residues. One of these residues, Tyr7, was previously shown to be deprotonated in the neutron crystal structure at pH 10. This observation indicated that Tyr7 has a perturbed pKa compared with free tyrosine. To further probe the pKa of this residue, NMR spectroscopic measurements of [(13)C]Tyr-labeled holo HCA II (with active-site Zn present) were preformed to titrate all Tyr residues between pH 5.4-11.0. In addition, neutron studies of apo HCA II (with Zn removed from the active site) at pH 7.5 and holo HCA II at pH 6 were conducted. This detailed interrogation of tyrosines in HCA II by NMR and neutron crystallography revealed a significantly lowered pKa of Tyr7 and how pH and Tyr proximity to Zn affect hydrogen-bonding interactions.
NMR and neutron studies of proton transfer [Biochemistry]
NMR and neutron studies of proton transfer
Michalczyk, R., Unkefer, C. J., Bacik, J.-P., Schrader, T. E., Ostermann, A., Kovalevsky, A. Y., McKenna, R., Fisher, S. Z....
Date: 2015-05-05
Human carbonic anhydrase II (HCA II) uses a Zn-bound OH-/H2O mechanism to catalyze the reversible hydration of CO2. This catalysis also involves a separate proton transfer step, mediated by an ordered solvent network coordinated by hydrophilic residues. One of these residues, Tyr7, was previously shown to be deprotonated in the... Read More
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Number: 18
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[NMR paper] Indirect use of deuterium in solution NMR studies of protein structure and hydrogen bonding.
Indirect use of deuterium in solution NMR studies of protein structure and hydrogen bonding.
Related Articles Indirect use of deuterium in solution NMR studies of protein structure and hydrogen bonding.
Prog Nucl Magn Reson Spectrosc. 2014 Feb;77:49-68
Authors: Tugarinov V
Abstract
A description of the utility of deuteration in protein NMR is provided with an emphasis on quantitative evaluation of the effects of deuteration on a number of NMR parameters of proteins: (1) chemical shifts, (2) scalar coupling constants, (3) relaxation...
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[NMR paper] Use of H/D isotope effects to gather information about hydrogen bonding and hydrogen exchange rates
Use of H/D isotope effects to gather information about hydrogen bonding and hydrogen exchange rates
Publication date: Available online 11 October 2013
Source:Journal of Magnetic Resonance</br>
Author(s): Mitsuhiro Takeda , Yohei Miyanoiri , Tsutomu Terauchi , Chin-Jiun Yang , Masatsune Kainosho</br>
Polar side-chains in proteins play important roles in formingand maintaining three-dimensional structures, and thus participate invarious biological functions. Until recently, most protein NMR studieshave focused onthe non-exchangeable protons of amino acid...
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Indirect Use of Deuterium in Solution NMR Studies of Protein Structure and Hydrogen Bonding
Indirect Use of Deuterium in Solution NMR Studies of Protein Structure and Hydrogen Bonding
Publication date: Available online 28 August 2013
Source:Progress in Nuclear Magnetic Resonance Spectroscopy</br>
Author(s): Vitali Tugarinov</br>
A description of the utility of deuteration in protein NMR is provided with an emphasis on quantitative evaluation of the effects of deuteration on a number of NMR parameters of proteins: (1) chemical shifts, (2) scalar coupling constants, (3) relaxation properties (R 1 and R 2 rates) of nuclei directly attached to one or more...
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Molecular Hydrogen Tweezers: Structure and Mechanisms by Neutron Diffraction, NMR, and Deuterium Labeling Studies in Solid and Solution
Molecular Hydrogen Tweezers: Structure and Mechanisms by Neutron Diffraction, NMR, and Deuterium Labeling Studies in Solid and Solution
Felix Schulz, Victor Sumerin, Sami Heikkinen, Bjo?rn Pedersen, Cong Wang, Michiko Atsumi, Markku Leskela?, Timo Repo, Pekka Pyykko?, Winfried Petry and Bernhard Rieger
http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja206394w/aop/images/medium/ja-2011-06394w_0015.gif
Journal of the American Chemical Society
DOI: 10.1021/ja206394w
http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA...
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Reaction Pathways of Proton Transfer in Hydrogen-Bonded Phenol–Carboxylate Complexes Explored by Combined UV–Vis and NMR Spectroscopy
Reaction Pathways of Proton Transfer in Hydrogen-Bonded Phenol–Carboxylate Complexes Explored by Combined UV–Vis and NMR Spectroscopy
Benjamin Koeppe, Peter M. Tolstoy and Hans-Heinrich Limbach
http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja201113a/aop/images/medium/ja-2011-01113a_0002.gif
Journal of the American Chemical Society
DOI: 10.1021/ja201113a
http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA
http://feeds.feedburner.com/~r/acs/jacsat/~4/QUQwn6dGPs4
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[NMR paper] Solution (1)H NMR study of the influence of distal hydrogen bonding and N terminus ac
Solution (1)H NMR study of the influence of distal hydrogen bonding and N terminus acetylation on the active site electronic and molecular structure of Aplysia limacina cyanomet myoglobin.
Related Articles Solution (1)H NMR study of the influence of distal hydrogen bonding and N terminus acetylation on the active site electronic and molecular structure of Aplysia limacina cyanomet myoglobin.
J Biol Chem. 2000 Jan 14;275(2):742-51
Authors: Nguyen BD, Xia Z, Cutruzzolá F, Allocatelli CT, Brunori M, La Mar GN
The sea hare Aplysia limacina...
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Arginine Kinase. Joint Crystallographic and NMR RDC Analyses link Substrate-Associate
Arginine Kinase. Joint Crystallographic and NMR RDC Analyses link Substrate-Associated Motions to Intrinsic Flexibility.
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J Mol Biol. 2010 Nov 11;
Authors: Niu X, Brüschweiler-Li L, Davulcu O, Skalicky JJ, Brüschweiler R, Chapman MS
The phosphagen kinase family, including creatine and arginine kinases, catalyze the reversible transfer of a "high energy" phosphate between ATP and a phospho-guanidino substrate. They...