Intra- and Intersubunit Ion-Pair Interactions Determinethe Ability of Apolipoprotein C-II Mutants To Form Hybrid AmyloidFibrils

		BioNMR > Educational resources > Journal club
Intra- and Intersubunit Ion-Pair Interactions Determinethe Ability of Apolipoprotein C-II Mutants To Form Hybrid AmyloidFibrils

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-16-2017, 04:38 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Intra- and Intersubunit Ion-Pair Interactions Determinethe Ability of Apolipoprotein C-II Mutants To Form Hybrid AmyloidFibrils

Intra- and Intersubunit Ion-Pair Interactions Determinethe Ability of Apolipoprotein C-II Mutants To Form Hybrid AmyloidFibrils

Biochemistry
DOI: 10.1021/acs.biochem.6b01146

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
NMR imprint of intersubunit communication [Biophysics and Computational Biology] NMR imprint of intersubunit communication Falk, B. T., Sapienza, P. J., Lee, A. L.... Date: 2016-08-23 Allosteric communication is critical for protein function and cellular homeostasis, and it can be exploited as a strategy for drug design. However, unlike many protein–ligand interactions, the structural basis for the long-range communication that underlies allostery is not well understood. This lack of understanding is most evident in the case... Read More PNAS: Number: 34	nmrlearner	Journal club	0	08-24-2016 04:35 AM
StructuralPolymorphism of Alzheimer’s ?-AmyloidFibrils as Controlled by an E22 Switch: A Solid-State NMR Study StructuralPolymorphism of Alzheimer’s ?-AmyloidFibrils as Controlled by an E22 Switch: A Solid-State NMR Study Matthew R. Elkins, Tuo Wang, Mimi Nick, Hyunil Jo, Thomas Lemmin, Stanley B. Prusiner, William F. DeGrado, Jan Sto?hr and Mei Hong http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.6b03715/20160728/images/medium/ja-2016-03715q_0011.gif Journal of the American Chemical Society DOI: 10.1021/jacs.6b03715 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/cM2mgHkI5JQ	nmrlearner	Journal club	0	07-29-2016 01:18 AM
Solution Conditions Affect the Ability of the K30DMutation To Prevent Amyloid Fibril Formation by Apolipoprotein C-II:Insights from Experiments and Theoretical Simulations Solution Conditions Affect the Ability of the K30DMutation To Prevent Amyloid Fibril Formation by Apolipoprotein C-II:Insights from Experiments and Theoretical Simulations http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00266/20160629/images/medium/bi-2016-00266s_0007.gif Biochemistry DOI: 10.1021/acs.biochem.6b00266 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/u4JMvhdbOWo More...	nmrlearner	Journal club	0	06-30-2016 02:26 AM
[NMR paper] Intra- and inter-molecular interactions of human galectin-3: assessment by full-assignment-based NMR. Intra- and inter-molecular interactions of human galectin-3: assessment by full-assignment-based NMR. Related Articles Intra- and inter-molecular interactions of human galectin-3: assessment by full-assignment-based NMR. Glycobiology. 2016 Feb 23; Authors: Ippel H, Miller MC, Vértesy S, Zhang Y, Cañada FJ, Suylen D, Umemoto K, Romanò C, Hackeng T, Tai G, Leffler H, Kopitz J, André S, Kübler D, Jiménez-Barbero J, Oscarson S, Gabius HJ, Mayo KH Abstract Galectin-3 is an adhesion/growth-regulatory protein with a modular design...	nmrlearner	Journal club	0	02-27-2016 12:52 AM
HighResolution Structural Characterization of A?42 AmyloidFibrils by Magic Angle Spinning NMR HighResolution Structural Characterization of A?42 AmyloidFibrils by Magic Angle Spinning NMR Michael T. Colvin, Robert Silvers, Birgitta Frohm, Yongchao Su, Sara Linse and Robert G. Griffin http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.5b03997/20150604/images/medium/ja-2015-03997u_0010.gif Journal of the American Chemical Society DOI: 10.1021/jacs.5b03997 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/KbGlyz-E4EI	nmrlearner	Journal club	0	06-05-2015 01:10 AM
Structure and lipid interactions of an anti-inflammatory and anti-atherogenic 10-residue class G() apolipoprotein J peptide using solution NMR. Structure and lipid interactions of an anti-inflammatory and anti-atherogenic 10-residue class G() apolipoprotein J peptide using solution NMR. Structure and lipid interactions of an anti-inflammatory and anti-atherogenic 10-residue class G(*) apolipoprotein J peptide using solution NMR. Biochim Biophys Acta. 2011 Jan;1808(1):498-507 Authors: Mishra VK, Palgunachari MN, Hudson JS, Shin R, Keenum TD, Krishna NR, Anantharamaiah GM The surprising observation that a 10-residue class G(?) peptide from apolipoprotein J, apoJ, possesses...	nmrlearner	Journal club	0	03-08-2011 01:40 PM
[NMR paper] Solution-state NMR investigation of DNA binding interactions in Escherichia coli form Solution-state NMR investigation of DNA binding interactions in Escherichia coli formamidopyrimidine-DNA glycosylase (Fpg): a dynamic description of the DNA/protein interface. Related Articles Solution-state NMR investigation of DNA binding interactions in Escherichia coli formamidopyrimidine-DNA glycosylase (Fpg): a dynamic description of the DNA/protein interface. DNA Repair (Amst). 2005 Mar 2;4(3):327-39 Authors: Buchko GW, McAteer K, Wallace SS, Kennedy MA Formamidopyrimidine-DNA glycosylase (Fpg) is a base excision repair (BER) protein...	nmrlearner	Journal club	0	11-24-2010 11:14 PM
[NMR paper] A NMR investigation on the interactions of the alpha-oligomeric form of the M13 coat A NMR investigation on the interactions of the alpha-oligomeric form of the M13 coat protein with lipids, which mimic the Escherichia coli inner membrane. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles A NMR investigation on the interactions of the alpha-oligomeric form of the M13 coat protein with lipids, which mimic the Escherichia coli inner membrane. Biochim Biophys Acta. 1991 Jul 1;1066(1):102-8 Authors: Sanders JC, Poile TW, Spruijt RB, Van Nuland NA, Watts A, Hemminga MA ...	nmrlearner	Journal club	0	08-21-2010 11:16 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off