Membrane protein-lipid interplay is important for cellular function, however, tools enabling the interrogation of protein dynamics within native lipid environments are scarce and often invasive. We establish that the styrene-maleic acid anhydride lipid particle (SMALP) technology can be coupled with hydrogen-deuterium exchange mass spectrometry (HDX-MS) to investigate membrane protein conformational dynamics within native lipid bilayers. We demonstrate changes in accessibility and dynamics of the rhomboid protease, GlpG, captured within three different native lipid compositions, and identify protein regions sensitive to changes in the native lipid environment. Our results illuminate the value of this approach for distinguishing the putative role(s) of the native lipid composition in modulating membrane protein conformational dynamics.
Structure and Dynamics of Membrane Proteins and MembraneAssociated Proteins with Native Bicelles from Eukaryotic Tissues
Structure and Dynamics of Membrane Proteins and MembraneAssociated Proteins with Native Bicelles from Eukaryotic Tissues
http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00575/20170927/images/medium/bi-2017-005759_0005.gif
Biochemistry
DOI: 10.1021/acs.biochem.7b00575
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09-28-2017 06:47 AM
[NMR paper] Expression, Purification, and Monitoring of Conformational Changes of hCB2 TMH67H8 in Different Membrane-Mimetic Lipid Mixtures Using Circular Dichroism and NMR Techniques.
Expression, Purification, and Monitoring of Conformational Changes of hCB2 TMH67H8 in Different Membrane-Mimetic Lipid Mixtures Using Circular Dichroism and NMR Techniques.
Related Articles Expression, Purification, and Monitoring of Conformational Changes of hCB2 TMH67H8 in Different Membrane-Mimetic Lipid Mixtures Using Circular Dichroism and NMR Techniques.
Membranes (Basel). 2017 Feb 17;7(1):
Authors: Tiburu EK, Zhuang J, Fleischer HN, Arthur PK, Awandare GA
Abstract
This work was intended to develop self-assembly lipids for...
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02-22-2017 06:28 PM
Specific Lipid Binding of Membrane Proteins in DetergentMicelles Characterized by NMR and Molecular Dynamics
Specific Lipid Binding of Membrane Proteins in DetergentMicelles Characterized by NMR and Molecular Dynamics
http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00836/20160915/images/medium/bi-2016-00836q_0005.gif
Biochemistry
DOI: 10.1021/acs.biochem.6b00836
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09-22-2016 06:22 AM
[NMR paper] Nanotube Array Method for Studying Lipid-Induced Conformational Changes of a Membrane Protein by Solid-State NMR.
Nanotube Array Method for Studying Lipid-Induced Conformational Changes of a Membrane Protein by Solid-State NMR.
Nanotube Array Method for Studying Lipid-Induced Conformational Changes of a Membrane Protein by Solid-State NMR.
Biophys J. 2015 Jan 6;108(1):5-9
Authors: Marek A, Tang W, Milikisiyants S, Nevzorov AA, Smirnov AI
Abstract
Anodic aluminum oxide substrates with macroscopically aligned homogeneous nanopores of 80*nm in diameter enable two-dimensional, solid-state nuclear magnetic resonance studies of lipid-induced...
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01-08-2015 01:29 PM
Nanotube Array Method for Studying Lipid-Induced Conformational Changes of a Membrane Protein by Solid-State NMR
Nanotube Array Method for Studying Lipid-Induced Conformational Changes of a Membrane Protein by Solid-State NMR
Publication date: 6 January 2015
Source:Biophysical Journal, Volume 108, Issue 1</br>
Author(s): Antonin Marek , Wenxing Tang , Sergey Milikisiyants , Alexander*A. Nevzorov , Alex*I. Smirnov</br>
Anodic aluminum oxide substrates with macroscopically aligned homogeneous nanopores of 80*nm in diameter enable two-dimensional, solid-state nuclear magnetic resonance studies of lipid-induced conformational changes of uniformly 15N-labeled Pf1 coat protein...
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01-07-2015 11:26 AM
Hydration dynamics as an intrinsic ruler for refining protein structure at lipid membrane interfaces
From The DNP-NMR Blog:
Hydration dynamics as an intrinsic ruler for refining protein structure at lipid membrane interfaces
Cheng, C.-Y., et al., Hydration dynamics as an intrinsic ruler for refining protein structure at lipid membrane interfaces. Proc. Nat. Aca. Sci. USA, 2013. 110(42): p. 16838-16843.
http://www.pnas.org/content/110/42/16838.abstract
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07-31-2014 01:45 AM
[NMR paper] Characterization of the near native conformational states of the SAM domain of Ste11 protein by NMR spectroscopy.
Characterization of the near native conformational states of the SAM domain of Ste11 protein by NMR spectroscopy.
Related Articles Characterization of the near native conformational states of the SAM domain of Ste11 protein by NMR spectroscopy.
Proteins. 2014 Jul 26;
Authors: Gupta S, Bhattacharjya S
Abstract
The sterile alpha motif or SAM domain is one of the most frequently present protein interaction modules with diverse functional attributions. SAM domain of the Ste11 protein of budding yeast plays important roles in...
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07-30-2014 10:22 AM
[NMR paper] Backbone dynamics of membrane proteins in lipid bilayers: the effect of two-dimension
Backbone dynamics of membrane proteins in lipid bilayers: the effect of two-dimensional array formation as revealed by site-directed solid-state 13C NMR studies on Ala- and Val-labeled bacteriorhodopsin.
Related Articles Backbone dynamics of membrane proteins in lipid bilayers: the effect of two-dimensional array formation as revealed by site-directed solid-state 13C NMR studies on Ala- and Val-labeled bacteriorhodopsin.
Biochim Biophys Acta. 2003 Oct 13;1616(2):127-36
Authors: Saitô H, Yamamoto K, Tuzi S, Yamaguchi S
We have recorded...