Related ArticlesINTERACTION BETWEEN WINE PHENOLIC ACIDS AND SALIVARY PROTEINS BY STD-NMR AND MOLECULAR-DYNAMIC SIMULATIONS.
J Agric Food Chem. 2017 Mar 02;:
Authors: Ferrer-Gallego R, Hernández-Hierro JM, Brás NF, Vale N, Gomes P, Mateus N, De Freitas V, Heredia FJ, Escribano-Bailon MT
Abstract
The interaction between phenolic compounds and salivary proteins is highly related to the astringency perception. Recently, it has been evidenced the existence of synergisms on the perceived astringency when phenolic acids were tested as mixtures in comparison to individual compounds, maintaining constant the total amount of the stimulus. The interactions between wine phenolic acids and the peptide fragment IB712 have been studied by Saturation-Transfer Difference (STD) NMR spectroscopy. This technique provided the dissociation constants and the percentage of interaction between both, individual and mixtures of hydroxybenzoic and hydroxycinnamic acids and the model peptide. It is noteworthy that hydroxybenzoic acids showed higher affinity for the peptide than hydroxycinnamic acids. To obtain further insights into the mechanisms of interaction, Molecular-Dynamics Simulations have been performed. Results obtained showed not only the ability of these compounds to interact with salivary proteins but also may justify the synergistic effect observed in previous sensory studies.
PMID: 28251854 [PubMed - as supplied by publisher]
[NMR paper] The application of DOSY NMR and molecular dynamics simulations to explore the mechanism(s) of micelle binding of antimicrobial peptides containing unnatural amino acids.
The application of DOSY NMR and molecular dynamics simulations to explore the mechanism(s) of micelle binding of antimicrobial peptides containing unnatural amino acids.
http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--media.wiley.com-assets-7315-19-Wiley_FullText_120x30_orange.png Related Articles The application of DOSY NMR and molecular dynamics simulations to explore the mechanism(s) of micelle binding of antimicrobial peptides containing unnatural amino acids.
Biopolymers. 2013 Aug;99(8):548-61
Authors: Clark TD,...
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04-23-2016 09:24 PM
[NMR paper] Probing the Interaction between cHAVc3 Peptide and the EC1 Domain of E-cadherin using NMR and Molecular Dynamics Simulations.
Probing the Interaction between cHAVc3 Peptide and the EC1 Domain of E-cadherin using NMR and Molecular Dynamics Simulations.
Related Articles Probing the Interaction between cHAVc3 Peptide and the EC1 Domain of E-cadherin using NMR and Molecular Dynamics Simulations.
J Biomol Struct Dyn. 2016 Jan 5;:1-48
Authors: Alaofi A, Farokhi E, Prasasty VD, Anbanandam A, Kuczera K, Siahaan TJ
Abstract
The goal of this work is to probe the interaction between cyclic cHAVc3 peptide and the EC1 domain of human E-cadherin protein. Cyclic...
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01-07-2016 08:36 AM
Solid state NMR of salivary calculi: Proline-rich salivary proteins, citrate, polysaccharides, lipids, and organic–mineral interactions
Solid state NMR of salivary calculi: Proline-rich salivary proteins, citrate, polysaccharides, lipids, and organic–mineral interactions
Publication date: Available online 3 January 2016
Source:Comptes Rendus Chimie</br>
Author(s): Yang Li, David G. Reid, Dominique Bazin, Michel Daudon, Melinda J. Duer</br>
Solid state NMR (ssNMR) can characterize mineral (31P) and organic (13C) components of human salivary stones (n*=*8). All show apatitic 31P spectra. 13C ssNMR indicates more protein, of more consistent composition, than apatitic uroliths, with prominent...
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Molecular simulations for dynamic nuclear polarization in liquids: a case study of TEMPOL in acetone and DMSO
From The DNP-NMR Blog:
Molecular simulations for dynamic nuclear polarization in liquids: a case study of TEMPOL in acetone and DMSO
Kucuk, S.E., et al., Molecular simulations for dynamic nuclear polarization in liquids: a case study of TEMPOL in acetone and DMSO. Phys Chem Chem Phys, 2015. 17(9): p. 6618-28.
http://www.ncbi.nlm.nih.gov/pubmed/25665728
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[NMR paper] Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts.
Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts.
Related Articles Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts.
Proc Natl Acad Sci U S A. 2014 Sep 5;
Authors: Boomsma W, Tian P, Frellsen J, Ferkinghoff-Borg J, Hamelryck T, Lindorff-Larsen K, Vendruscolo M
Abstract
Methods of protein structure determination based on NMR chemical shifts are becoming increasingly common. The most widely used approaches adopt the molecular...
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[NMR paper] The solution conformations of amino acids from molecular dynamics simulations of Gly-
The solution conformations of amino acids from molecular dynamics simulations of Gly-X-Gly peptides: comparison with NMR parameters.
Related Articles The solution conformations of amino acids from molecular dynamics simulations of Gly-X-Gly peptides: comparison with NMR parameters.
Biochem Cell Biol. 1998;76(2-3):164-70
Authors: van der Spoel D
The conformations that amino acids can adopt in the random coil state are of fundamental interest in the context of protein folding research and studies of protein-peptide interactions. To date, no...
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[NMR paper] Study of the interaction between salivary proline-rich proteins and a polyphenol by 1
Study of the interaction between salivary proline-rich proteins and a polyphenol by 1H-NMR spectroscopy.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif Related Articles Study of the interaction between salivary proline-rich proteins and a polyphenol by 1H-NMR spectroscopy.
Eur J Biochem. 1994 Feb 1;219(3):923-35
Authors: Murray NJ, Williamson MP, Lilley TH, Haslam E
The interaction between salivary proline-rich proteins and plant polyphenols...
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[NMR paper] Study of the interaction between salivary proline-rich proteins and a polyphenol by 1
Study of the interaction between salivary proline-rich proteins and a polyphenol by 1H-NMR spectroscopy.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif Related Articles Study of the interaction between salivary proline-rich proteins and a polyphenol by 1H-NMR spectroscopy.
Eur J Biochem. 1994 Feb 1;219(3):923-35
Authors: Murray NJ, Williamson MP, Lilley TH, Haslam E
The interaction between salivary proline-rich proteins and plant polyphenols...