BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 01-07-2019, 05:49 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Increasing the buffering capacity of minimal media leads to higher protein yield

Increasing the buffering capacity of minimal media leads to higher protein yield

Abstract

We describe a general and simple modification to the standard M9 minimal medium recipe that leads to an approximate twofold increase in the yield of heterologously expressed proteins in Escherichia coli BL21(DE3) bacteria. We monitored the growth of bacteria transformed with plasmids for three different test proteins in five minimal media with different concentrations of buffering salts and/or initial media pH. After purification of the over-expressed proteins, we found a clear correlation between the protein yield and change in media pH over time, where the minimal media that were the most buffered and therefore most resistant to change in pH produced the most protein. And in all three test protein cases, the difference in yield was nearly twofold between the best and worst buffering media. Thus, we propose that increasing the buffering capacity of M9 minimal media will generally lead to a similar increase for most of the proteins currently produced by this standard protein expression protocol. Moreover, we have qualitatively found that this effect also extends to deuterated M9 minimal media growths, which could lead to significant cost savings in these preparations.



Source: Journal of Biomolecular NMR
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Minimal NMR distance information for rigidity of protein graphs
Minimal NMR distance information for rigidity of protein graphs Publication date: Available online 26 April 2018 Source:Discrete Applied Mathematics</br> Author(s): Carlile Lavor, Leo Liberti, Bruce Donald, Bradley Worley, Benjamin Bardiaux, Thérèse E. Malliavin, Michael Nilges</br> Nuclear Magnetic Resonance (NMR) experiments provide distances between nearby atoms of a protein molecule. The corresponding structure determination problem is to determine the 3D protein structure by exploiting such distances. We present a new order on the atoms of the...
nmrlearner Journal club 0 04-27-2018 05:00 AM
Increasing the amount of information that can be extracted from a protein microarray - Phys.Org
Increasing the amount of information that can be extracted from a protein microarray - Phys.Org http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcSfIXTe4vaQTrvYQNnsa8m-YENwfi7xUyWRmkkYYO0YpRLWCvKdecVtJWLFfZGwKnReajxqdNU Phys.Org <img alt="" height="1" width="1"> Increasing the amount of information that can be extracted from a protein microarray Phys.Org The approach will nicely complement and supplement existing techniques, used for protein characterization, such as CD, NMR and mass spectrometry," commented Biomedical Spectroscopy and Imaging Editor-in-Chief Dr. Parvez I....
nmrlearner Online News 0 06-03-2016 04:52 PM
Protein Crystallization Market: Driven By: Increasing technological ... - Medgadget.com (blog)
Protein Crystallization Market: Driven By: Increasing technological ... - Medgadget.com (blog) <img alt="" height="1" width="1"> Protein Crystallization Market: Driven By: Increasing technological ... Medgadget.com (blog) Various techniques used during protein crystallization technology are ion-exchange chromatography, high-performance liquid chromatography (HPLC), gel-electrophoresis, x-ray crystallography and nuclear magnetic resonance (NMR). On the basis of ... and more &raquo; Read here
nmrlearner Online News 0 12-17-2015 01:53 PM
Protein Crystallization Market: Increasing spending in research and ... - Medgadget.com (blog)
Protein Crystallization Market: Increasing spending in research and ... - Medgadget.com (blog) <img alt="" height="1" width="1"> Protein Crystallization Market: Increasing spending in research and ... Medgadget.com (blog) Various techniques used during protein crystallization technology are ion-exchange chromatography, high-performance liquid chromatography (HPLC), gel-electrophoresis, x-ray crystallography and nuclear magnetic resonance (NMR). On the basis of ... and more &raquo; Read here
nmrlearner Online News 0 12-15-2015 08:09 PM
Phenotypic Screening Identifies Protein Synthesis Inhibitors as H-Ras-Nanocluster-Increasing Tumor Growth Inducers
Phenotypic Screening Identifies Protein Synthesis Inhibitors as H-Ras-Nanocluster-Increasing Tumor Growth Inducers http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.5b00724/20151130/images/medium/bi-2015-00724w_0004.gif Biochemistry DOI: 10.1021/acs.biochem.5b00724 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/J39aNiUlZbQ More...
nmrlearner Journal club 0 11-30-2015 09:39 PM
TD NMR as a method to determine and characterize the water-binding capacity of whey protein microparticles
TD NMR as a method to determine and characterize the water-binding capacity of whey protein microparticles Publication date: Available online 9 October 2015 Source:Food Hydrocolloids</br> Author(s): Jorien P.C.M. Peters, Frank J. Vergeldt, Henk Van As, Hannemieke Luyten, Remko M. Boom, Atze Jan van der Goot</br> Water-binding capacity (WBC) is commonly measured with a centrifugation method in which a sample is hydrated in excess water and the pellet weight after centrifugation defines the WBC. When a dispersion is being analyzed, here containing whey...
nmrlearner Journal club 0 10-10-2015 06:11 AM
Increasing Throughput in Protein Thermal Shift Assays - Genetic Engineering & Biotechnology News
<img alt="" height="1" width="1"> Increasing Throughput in Protein Thermal Shift Assays Genetic Engineering & Biotechnology News Historically, protein interaction studies have been measured using an array of techniques, including nuclear magnetic resonance, differential scanning calorimetry, and surface plasma resonance imaging. Additionally, protein melt screening methods used ... Increasing Throughput in Protein Thermal Shift Assays - Genetic Engineering & Biotechnology News More...
nmrlearner Online News 0 04-11-2015 12:04 AM
[NMR paper] Contributions to protein entropy and heat capacity from bond vector motions measured
Contributions to protein entropy and heat capacity from bond vector motions measured by NMR spin relaxation. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Contributions to protein entropy and heat capacity from bond vector motions measured by NMR spin relaxation. J Mol Biol. 1997 Oct 10;272(5):790-804 Authors: Yang D, Mok YK, Forman-Kay JD, Farrow NA, Kay LE The backbone dynamics of both folded and unfolded states of staphylococcal nuclease (SNase) and the N-terminal...
nmrlearner Journal club 0 08-22-2010 05:08 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 01:53 AM.


Map