Related ArticlesImproving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction.
J Biomol NMR. 2017 Jun;68(2):67-77
Authors: Bostock MJ, Holland DJ, Nietlispach D
Abstract
NMR spectroscopy is central to atomic resolution studies in biology and chemistry. Key to this approach are multidimensional experiments. Obtaining such experiments with sufficient resolution, however, is a slow process, in part since each time increment in every indirect dimension needs to be recorded twice, in quadrature. We introduce a modified compressed sensing (CS) algorithm enabling reconstruction of data acquired with random acquisition of quadrature components in gradient-selection NMR. We name this approach random quadrature detection (RQD). Gradient-selection experiments are essential to the success of modern NMR and with RQD, a 50*% reduction in the number of data points per indirect dimension is possible, by only acquiring one quadrature component per time point. Using our algorithm (CSRQD), high quality reconstructions are achieved. RQD is modular and combined with non-uniform sampling we show that this provides increased flexibility in designing sampling schedules leading to improved resolution with increasing benefits as dimensionality of experiments increases, with particular advantages for 4- and higher dimensional experiments.
Pitfalls in compressed sensing reconstruction and how to avoid them
Pitfalls in compressed sensing reconstruction and how to avoid them
Abstract
Multidimensional NMR can provide unmatched spectral resolution, which is crucial when dealing with samples of biological macromolecules. The resolution, however, comes at the high price of long experimental time. Non-uniform sampling (NUS) of the evolution time domain allows to suppress this limitation by sampling only a small fraction of the data, but requires sophisticated algorithms to reconstruct omitted data points. A significant group of such algorithms known as...
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11-19-2016 08:35 PM
Improving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction
Improving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction
Abstract
NMR spectroscopy is central to atomic resolution studies in biology and chemistry. Key to this approach are multidimensional experiments. Obtaining such experiments with sufficient resolution, however, is a slow process, in part since each time increment in every indirect dimension needs to be recorded twice, in quadrature. We introduce a modified compressed sensing (CS) algorithm enabling reconstruction of data acquired with...
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09-22-2016 06:26 AM
[NMR paper] Sampling scheme and compressed sensing applied to solid-state NMR spectroscopy.
Sampling scheme and compressed sensing applied to solid-state NMR spectroscopy.
Related Articles Sampling scheme and compressed sensing applied to solid-state NMR spectroscopy.
J Magn Reson. 2013 Oct 1;237C:40-48
Authors: Lin EC, Opella SJ
Abstract
We describe the incorporation of non-uniform sampling (NUS) compressed sensing (CS) into oriented sample (OS) solid-state NMR for stationary aligned samples and magic angle spinning (MAS) Solid-state NMR for unoriented 'powder' samples. Both simulated and experimental results indicate that...
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10-23-2013 03:49 AM
[NMR paper] A comparison of convex and non-convex compressed sensing applied to multidimensional NMR.
A comparison of convex and non-convex compressed sensing applied to multidimensional NMR.
http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles A comparison of convex and non-convex compressed sensing applied to multidimensional NMR.
J Magn Reson. 2012 Oct;223:1-10
Authors: Kazimierczuk K, Orekhov VY
Abstract
The resolution of multidimensional NMR spectra can be severely limited when regular sampling based on the Nyquist-Shannon theorem is used. The...
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02-23-2013 01:51 PM
Compressed sensing reconstruction of undersampled 3D NOESY spectra: application to large membrane proteins
Compressed sensing reconstruction of undersampled 3D NOESY spectra: application to large membrane proteins
Abstract Central to structural studies of biomolecules are multidimensional experiments. These are lengthy to record due to the requirement to sample the full Nyquist grid. Time savings can be achieved through undersampling the indirectly-detected dimensions combined with non-Fourier Transform (FT) processing, provided the experimental signal-to-noise ratio is sufficient. Alternatively, resolution and signal-to-noise can be improved within a given experiment time. However, non-FT...
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07-30-2012 07:42 AM
Random phase detection in multidimensional NMR [Biophysics and Computational Biology]
Random phase detection in multidimensional NMR
Maciejewski, M. W., Fenwick, M., Schuyler, A. D., Stern, A. S., Gorbatyuk, V., Hoch, J. C....
Date: 2011-10-04
Despite advances in resolution accompanying the development of high-field superconducting magnets, biomolecular applications of NMR require multiple dimensions in order to resolve individual resonances, and the achievable resolution is typically limited by practical constraints on measuring time. In addition to the need for measuring long evolution times to obtain high resolution, the need to distinguish the sign of the frequency...
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10-04-2011 08:47 PM
Compressed sensing and the reconstruction of ultrafast 2D NMR data: Principles and biomolecular applications.
Compressed sensing and the reconstruction of ultrafast 2D NMR data: Principles and biomolecular applications.
Compressed sensing and the reconstruction of ultrafast 2D NMR data: Principles and biomolecular applications.
J Magn Reson. 2011 Apr;209(2):352-8
Authors: Shrot Y, Frydman L
A topic of active investigation in 2D NMR relates to the minimum number of scans required for acquiring this kind of spectra, particularly when these are dictated by sampling rather than by sensitivity considerations. Reductions in this minimum number of scans have...