HNCO-based measurement of one-bond amide 15N-1H couplings with optimized precision
Abstract A pair of 3D HNCO-based experiments have been developed with the aim of optimizing the precision of measurement of 1JNH couplings. Both pulse sequences record 1JNH coupling evolution during the entire constant time interval that 15N magnetization is dephasing or rephasing with respect to the directly bonded 13Cā?² nucleus, with 15N13Cā?² multiple quantum coherence maintained during the 13Cā?² evolution period. The first experiment, designed for smaller proteins, produces an apparent doubling of the 1JNH coupling without any accompanying increases in line width. The second experiment is a J-scaled TROSY-HNCO experiment in which the 1JNH coupling is measured by frequency difference between resonances offset symmetrically about the position of the downfield component of the 15N doublet (i.e. the TROSY resonance). This experiment delivers significant gains in precision of 1JNH coupling measurement compared to existing J-scaled TROSY-HNCO experiments. With the proper choice of acquisition parameters and sufficient sensitivity to acquire a 3D TROSY-HNCO experiment, it is shown that 1JNH couplings can be measured with a precision which approaches or exceeds the precision of measurement with which the frequency of the TROSY resonance itself can be determined.
Content Type Journal Article
DOI 10.1007/s10858-009-9391-2
Authors
Luke Arbogast, Johns Hopkins University Department of Chemistry 3400 North Charles Street Baltimore MD 21218 USA
Ananya Majumdar, Johns Hopkins University Department of Chemistry 3400 North Charles Street Baltimore MD 21218 USA
Joel R. Tolman, Johns Hopkins University Department of Chemistry 3400 North Charles Street Baltimore MD 21218 USA
Measurement of amide hydrogen exchange rates with the use of radiation damping
Measurement of amide hydrogen exchange rates with the use of radiation damping
Abstract A simple method for measuring amide hydrogen exchange rates is presented, which is based on the selective inversion of water magnetization with the use of radiation damping. Simulations show that accurate exchange rates can be measured despite the complications of radiation damping and cross relaxation to the exchange process between amide and water protons. This method cannot eliminate the contributions of the exchange-relayed NOE and direct NOE to the measured exchange rates, but minimize the...
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Accurate measurement of one-bond H-X heteronuclear dipolar couplings in MAS solid-state NMR.
Accurate measurement of one-bond H-X heteronuclear dipolar couplings in MAS solid-state NMR.
Accurate measurement of one-bond H-X heteronuclear dipolar couplings in MAS solid-state NMR.
J Magn Reson. 2011 Mar 21;
Authors: Schanda P, Meier BH, Ernst M
The accurate experimental determination of dipolar-coupling constants for one-bond heteronuclear dipolar couplings in solids is a key for the quantification of the amplitudes of motional processes. Averaging of the dipolar coupling reports on motions on time scales up to the inverse of the coupling...
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Accurate Measurement of One-Bond H-X Heteronuclear Dipolar Couplings in MAS Solid-State NMR
Accurate Measurement of One-Bond H-X Heteronuclear Dipolar Couplings in MAS Solid-State NMR
Publication year: 2011
Source: Journal of Magnetic Resonance, In Press, Accepted Manuscript, Available online 21 March 2011</br>
Paul, Schanda , Beat H., Meier , Matthias, Ernst</br>
The accurate experimental determination of dipolar-coupling constants for one-bond heteronuclear dipolar couplings in solids is a key for the quantification of the amplitudes of motional processes. Averaging of the dipolar coupling reports on motions on time scales up to the inverse of the coupling constant, in...
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03-22-2011 07:30 AM
[NMR paper] Direct measurement of angles between bond vectors in high-resolution NMR.
Direct measurement of angles between bond vectors in high-resolution NMR.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--highwire.stanford.edu-icons-externalservices-pubmed-custom-sci_full_freeReg.gif Related Articles Direct measurement of angles between bond vectors in high-resolution NMR.
Science. 1997 May 23;276(5316):1230-3
Authors: Reif B, Hennig M, Griesinger C
Angles between two interatomic vectors are measured for structure elucidation in solution nuclear magnetic resonance (NMR). The angles can be determined directly by using...
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[NMR paper] Direct measurement of angles between bond vectors in high-resolution NMR.
Direct measurement of angles between bond vectors in high-resolution NMR.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--highwire.stanford.edu-icons-externalservices-pubmed-custom-sci_full_freeReg.gif Related Articles Direct measurement of angles between bond vectors in high-resolution NMR.
Science. 1997 May 23;276(5316):1230-3
Authors: Reif B, Hennig M, Griesinger C
Angles between two interatomic vectors are measured for structure elucidation in solution nuclear magnetic resonance (NMR). The angles can be determined directly by using...
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08-22-2010 03:03 PM
[NMR paper] Bicelle-based liquid crystals for NMR-measurement of dipolar couplings at acidic and
Bicelle-based liquid crystals for NMR-measurement of dipolar couplings at acidic and basic pH values.
Related Articles Bicelle-based liquid crystals for NMR-measurement of dipolar couplings at acidic and basic pH values.
J Biomol NMR. 1999 Feb;13(2):187-91
Authors: Ottiger M, Bax A
It is demonstrated that mixtures of ditetradecyl-phosphatidylcholine or didodecyl-phoshatidylcholine and dihexyl-phosphatidylcholine in water from lyotropic liquid crystalline phases under similar conditions as previously reported for bicelles consisting of...
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08-21-2010 04:03 PM
MQ-HNCO-TROSY for the measurement of scalar and residual dipolar couplings in larger
Abstract We describe a novel pulse sequence, MQ-HNCO-TROSY, for the measurement of scalar and residual dipolar couplings between amide proton and nitrogen in larger proteins. The experiment utilizes the whole 2TN polarization transfer delay for labeling of 15N chemical shift in a constant time manner, which efficiently doubles the attainable resolution in 15N dimension with respect to the conventional HNCO-TROSY experiment. In addition, the accordion principle is employed for measuring (J + D)NHs, and the multiplet components are selected with the generalized version of the TROSY scheme...
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08-14-2010 04:19 AM
15NH/D-SOLEXSY experiment for accurate measurement of amide solvent exchange rates: a
Abstract Amide solvent exchange rates are regarded as a valuable source of information on structure/dynamics of unfolded (disordered) proteins. Proton-based saturation transfer experiments, normally used to measure solvent exchange, are known to meet some serious difficulties. The problems mainly arise from the need to (1) manipulate water magnetization and (2) discriminate between multiple magnetization transfer pathways that occur within the proton pool. Some of these issues are specific to unfolded proteins. For example, the compensation scheme used to cancel the Overhauser effect in the...