Related ArticlesFormation of the chaperonin complex studied by 2D NMR spectroscopy.
PLoS One. 2017;12(10):e0187022
Authors: Takenaka T, Nakamura T, Yanaka S, Yagi-Utsumi M, Chandak MS, Takahashi K, Paul S, Makabe K, Arai M, Kato K, Kuwajima K
Abstract
We studied the interaction between GroES and a single-ring mutant (SR1) of GroEL by the NMR titration of 15N-labeled GroES with SR1 at three different temperatures (20, 25 and 30°C) in the presence of 3 mM ADP in 100 mM KCl and 10 mM MgCl2 at pH 7.5. We used SR1 instead of wild-type double-ring GroEL to precisely control the stoichiometry of the GroES binding to be 1:1 ([SR1]:[GroES]). Native heptameric GroES was very flexible, showing well resolved cross peaks of the residues in a mobile loop segment (residue 17-34) and at the top of a roof hairpin (Asn51) in the heteronuclear single quantum coherence spectra. The binding of SR1 to GroES caused the cross peaks to disappear simultaneously, and hence it occurred in a single-step cooperative manner with significant immobilization of the whole GroES structure. The binding was thus entropic with a positive entropy change (219 J/mol/K) and a positive enthalpy change (35 kJ/mol), and the binding constant was estimated at 1.9×105 M-1 at 25°C. The NMR titration in 3 mM ATP also indicated that the binding constant between GroES and SR1 increased more than tenfold as compared with the binding constant in 3 mM ADP. These results will be discussed in relation to the structure and mechanisms of the chaperonin GroEL/GroES complex.
[NMR paper] Diffusion NMR studies of macromolecular complex formation, crowding and confinement in soft materials.
Diffusion NMR studies of macromolecular complex formation, crowding and confinement in soft materials.
Related Articles Diffusion NMR studies of macromolecular complex formation, crowding and confinement in soft materials.
Prog Nucl Magn Reson Spectrosc. 2016 May;94-95:1-10
Authors: Barhoum S, Palit S, Yethiraj A
Abstract
Label-free methods to obtain hydrodynamic size from diffusion measurements are desirable in environments that contain multiple macromolecular species at a high total concentration: one example is the crowded...
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Diffusion NMR studies of macromolecular complex formation, crowding and confinement in soft materials
Diffusion NMR studies of macromolecular complex formation, crowding and confinement in soft materials
Publication date: May 2016
Source:Progress in Nuclear Magnetic Resonance Spectroscopy, Volumes 94–95</br>
Author(s): Suliman Barhoum, Swomitra Palit, Anand Yethiraj</br>
Label-free methods to obtain hydrodynamic size from diffusion measurements are desirable in environments that contain multiple macromolecular species at a high total concentration: one example is the crowded cellular environment. In complex, multi-species macromolecular environments – in this...
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[NMR paper] Structure of pravastatin and its complex with sodium dodecyl sulfate micelles studied by NMR spectroscopy.
Structure of pravastatin and its complex with sodium dodecyl sulfate micelles studied by NMR spectroscopy.
http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--media.wiley.com-assets-2250-98-WileyOnlineLibrary_FullTextOnline_120x27.gif Related Articles Structure of pravastatin and its complex with sodium dodecyl sulfate micelles studied by NMR spectroscopy.
Magn Reson Chem. 2015 Feb;53(2):110-4
Authors: Galiullina LF, Rakhmatullin IZ, Klochkova EA, Aganov AV, Klochkov VV
Abstract
The aim of this work was...
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09-30-2015 10:34 PM
[NMR paper] The dynamic complex of cytochrome c6 and cytochrome f studied with paramagnetic NMR spectroscopy.
The dynamic complex of cytochrome c6 and cytochrome f studied with paramagnetic NMR spectroscopy.
The dynamic complex of cytochrome c6 and cytochrome f studied with paramagnetic NMR spectroscopy.
Biochim Biophys Acta. 2014 Mar 28;
Authors: Díaz-Moreno I, Hulsker R, Skubak P, Foerster JM, Cavazzini D, Finiguerra MG, Díaz-Quintana A, Moreno-Beltrán B, Rossi GL, Ullmann GM, Pannu NS, De la Rosa MA, Ubbink M
Abstract
Rapid transfer of electrons in the photosynthetic redox chain is achieved by the formation short-lived complexes of...
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Role of Hydrophobic Interactions in the EncounterComplex Formation of the Plastocyanin and Cytochrome f Complex Revealed by Paramagnetic NMR Spectroscopy
Role of Hydrophobic Interactions in the EncounterComplex Formation of the Plastocyanin and Cytochrome f Complex Revealed by Paramagnetic NMR Spectroscopy
Sandra Scanu, Johannes M. Foerster, G. Matthias Ullmann and Marcellus Ubbink
http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja4015452/aop/images/medium/ja-2013-015452_0009.gif
Journal of the American Chemical Society
DOI: 10.1021/ja4015452
http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA
http://feeds.feedburner.com/~r/acs/jacsat/~4/I9ARcKlvRs8
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[NMR paper] Role of hydrophobic interactions in the encounter complex formation of plastocyanin and cytochrome f complex revealed by paramagnetic NMR spectroscopy.
Role of hydrophobic interactions in the encounter complex formation of plastocyanin and cytochrome f complex revealed by paramagnetic NMR spectroscopy.
Role of hydrophobic interactions in the encounter complex formation of plastocyanin and cytochrome f complex revealed by paramagnetic NMR spectroscopy.
J Am Chem Soc. 2013 Apr 29;
Authors: Scanu S, Förster J, Ullmann GM, Ubbink M
Abstract
Protein complex formation is thought to be at least a two-step process, in which the active complex is preceded by the formation of an encounter complex....
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[NMR paper] The H/D-exchange Kinetics of the Escherichia coli Co-chaperonin GroES Studied by 2D-NMR and DMSO-Quenched Exchange Methods.
The H/D-exchange Kinetics of the Escherichia coli Co-chaperonin GroES Studied by 2D-NMR and DMSO-Quenched Exchange Methods.
Related Articles The H/D-exchange Kinetics of the Escherichia coli Co-chaperonin GroES Studied by 2D-NMR and DMSO-Quenched Exchange Methods.
J Mol Biol. 2013 Apr 11;
Authors: Chandak MS, Nakamura T, Makabe K, Takenaka T, Mukaiyama A, Chaudhuri TK, Kato K, Kuwajima K
Abstract
We studied hydrogen/deuterium-exchange reactions of peptide amide protons of GroES using two different techniques: (1) two-dimensional (1)H-(15)N...
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[NMR paper] Conformational changes of the BS2 operator DNA upon complex formation with the Antenn
Conformational changes of the BS2 operator DNA upon complex formation with the Antennapedia homeodomain studied by NMR with 13C/15N-labeled DNA.
Related Articles Conformational changes of the BS2 operator DNA upon complex formation with the Antennapedia homeodomain studied by NMR with 13C/15N-labeled DNA.
J Mol Biol. 1999 Sep 24;292(3):609-17
Authors: Fernández C, Szyperski T, Billeter M, Ono A, Iwai H, Kainosho M, Wüthrich K
The NMR structures have been determined for a 13C/15N doubly labeled 14 base-pair DNA duplex comprising the BS2...