Related ArticlesEvidence for a strong hydrogen bond in the catalytic dyad of transition-state analogue inhibitor complexes of chymotrypsin from proton-triton NMR isotope shifts.
J Am Chem Soc. 2002 Apr 24;124(16):4196-7
Authors: Westler WM, Frey PA, Lin J, Wemmer DE, Morimoto H, Williams PG, Markley JL
We present here the first accurate measurements of 1H (H) versus 3H (T) isotope shift (DeltadeltaT-H = deltaT - deltaH) in a protein. This approach was used to investigate the strength of the hydrogen bond between His57 and Asp102 in the catalytic dyad of chymotrypsin in three transition-state analogue inhibited complexes: N-acetyl-l-phenylalanyl trifluoromethyl ketone (N-AcF-CF3), N-acetyl-l-valyl-l-phenylalanyl trifluoromethyl ketone (N-AcVF-CF3), and N-acetyl-l-leucyl-l--phenylalanyl trifluoromethyl ketone (N-AcLF-CF3). The measured DeltadeltaT-H values for His57 Hdelta1 in these complexes were between -0.63 and -0.68 ppm. These values are consistent with a strong hydrogen bond in each of these complexes, but not with a very strong hydrogen bond, which would be expected to have a DeltadeltaT-H. value near or greater than zero.
[NMR paper] Measuring pK(a) values in protein folding transition state ensembles by NMR spectrosc
Measuring pK(a) values in protein folding transition state ensembles by NMR spectroscopy.
Related Articles Measuring pK(a) values in protein folding transition state ensembles by NMR spectroscopy.
J Am Chem Soc. 2005 Jun 29;127(25):8904-5
Authors: Tollinger M, Kay LE, Forman-Kay JD
Protein folding kinetic data have been obtained for the marginally stable N-terminal SH3 domain of the Drosophila protein drk as a function of pH in order to investigate the electrostatic properties of Asp8 in the folding transition state ensemble. The slow exchange...
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[NMR paper] Improvement of hydrogen bond geometry in protein NMR structures by residual dipolar c
Improvement of hydrogen bond geometry in protein NMR structures by residual dipolar couplings--an assessment of the interrelation of NMR restraints.
Related Articles Improvement of hydrogen bond geometry in protein NMR structures by residual dipolar couplings--an assessment of the interrelation of NMR restraints.
J Biomol NMR. 2004 Jan;28(1):31-41
Authors: Jensen PR, Axelsen JB, Lerche MH, Poulsen FM
We have examined how the hydrogen bond geometry in three different proteins is affected when structural restraints based on measurements of...
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[NMR paper] Temperature-dependence of protein hydrogen bond properties as studied by high-resolut
Temperature-dependence of protein hydrogen bond properties as studied by high-resolution NMR.
Related Articles Temperature-dependence of protein hydrogen bond properties as studied by high-resolution NMR.
J Mol Biol. 2002 Apr 12;317(5):739-52
Authors: Cordier F, Grzesiek S
The temperature-dependence of a large number of NMR parameters describing hydrogen bond properties in the protein ubiquitin was followed over a range from 5 to 65 degrees C. The parameters comprise hydrogen bond (H-bond) scalar couplings, h3JNC', chemical shifts, amide...
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NMR study of hydrogen exchange during the B-Z transition of a DNA duplex induced by t
NMR study of hydrogen exchange during the B-Z transition of a DNA duplex induced by the Z? domains of yatapoxvirus E3L.
Related Articles NMR study of hydrogen exchange during the B-Z transition of a DNA duplex induced by the Z? domains of yatapoxvirus E3L.
FEBS Lett. 2010 Oct 8;
Authors: Lee EH, Seo YJ, Ahn HC, Kang YM, Kim HE, Lee YM, Choi BS, Lee JH
The Yaba-like disease viruses (YLDV) are members of the Yatapoxvirus family and have double-stranded DNA genomes. The E3L protein, which is essential for pathogenesis in the vaccinia virus,...
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10-13-2010 02:18 PM
[NMR paper] A 1H NMR study of structurally relevant inter-segmental hydrogen bond in cytochrome c
A 1H NMR study of structurally relevant inter-segmental hydrogen bond in cytochrome c.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles A 1H NMR study of structurally relevant inter-segmental hydrogen bond in cytochrome c.
Biochim Biophys Acta. 1997 Dec 5;1343(2):193-202
Authors: Yamamoto Y
NMR signal arising from His 26 N(epsilon)H proton in horse and tuna ferrocytochromes c has been assigned. This His residue is highly conserved in most mitochondrial cytochromes c and...
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[NMR paper] Direct evidence for a two-state protein unfolding transition from hydrogen-deuterium
Direct evidence for a two-state protein unfolding transition from hydrogen-deuterium exchange, mass spectrometry, and NMR.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Direct evidence for a two-state protein unfolding transition from hydrogen-deuterium exchange, mass spectrometry, and NMR.
Protein Sci. 1996 Jun;5(6):1060-6
...
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[NMR paper] A low-barrier hydrogen bond in subtilisin: 1H and 15N NMR studies with peptidyl trifl
A low-barrier hydrogen bond in subtilisin: 1H and 15N NMR studies with peptidyl trifluoromethyl ketones.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles A low-barrier hydrogen bond in subtilisin: 1H and 15N NMR studies with peptidyl trifluoromethyl ketones.
Biochemistry. 1996 Dec 10;35(49):15941-8
Authors: Halkides CJ, Wu YQ, Murray CJ
The N delta 1 proton of His 64 forms a hydrogen bond with Asp 32, as part of the catalytic triad in serine proteases of the subtilisin family. His 64 in...
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[NMR paper] Catalytic activity of the SH2 domain of human pp60c-src; evidence from NMR, mass spec
Catalytic activity of the SH2 domain of human pp60c-src; evidence from NMR, mass spectrometry, site-directed mutagenesis and kinetic studies for an inherent phosphatase activity.
Related Articles Catalytic activity of the SH2 domain of human pp60c-src; evidence from NMR, mass spectrometry, site-directed mutagenesis and kinetic studies for an inherent phosphatase activity.
Biochemistry. 1995 Nov 21;34(46):15351-8
Authors: Boerner RJ, Consler TG, Gampe RT, Weigl D, Willard DH, Davis DG, Edison AM, Loganzo F, Kassel DB, Xu RX
During solution...