Related ArticlesElucidation of the primary structure of the lantibiotic epilancin K7 from Staphylococcus epidermidis K7. Cloning and characterisation of the epilancin-K7-encoding gene and NMR analysis of mature epilancin K7.
Eur J Biochem. 1995 Jun 1;230(2):587-600
Authors: van de Kamp M, van den Hooven HW, Konings RN, Bierbaum G, Sahl HG, Kuipers OP, Siezen RJ, de Vos WM, Hilbers CW, van de Ven FJ
Lantibiotics are bacteriocins that contain unusual amino acids such as lanthionines and alpha, beta-didehydro residues generated by posttranslational modification of a ribosomally synthesized precursor protein. The structural gene encoding the novel lantibiotic epilancin K7 from Staphylococcus epidermidis K7 was cloned and its nucleotide sequence was determined. The gene, which was named elkA, codes for a 55-residue preprotein, consisting of an N-terminal 24-residue leader peptide, and a C-terminal 31-residue propeptide which is posttranslationally modified and processed to yield mature epilancin K7. In common with the type-A lantibiotics nisin A and nisin Z, subtilin, epidermin, gallidermin and Pep5, pre-epilancin K7 has a so-called class-Al leader peptide. Downstream and upstream of the elkA gene, the starts of two open-reading-frames, named elkP and elkT, were identified. The elkP and elkT genes presumably encode a leader peptidase and a translocator protein, respectively, which may be involved in the processing and export of epilancin K7. The amino acid sequence of the unmodified pro-epilancin K7, deduced from the elkA gene sequence, is in full agreement with the amino acid sequence of mature epilancin K7, determined previously by means of NMR spectroscopy [van de Kamp, M., Horstink, L. M., van den Hooven, M. W., Konings, R. N. M., Hilbers, C. W., Sahl, H.-G., Metzger, J. W. & van de Ven, F. J. M. (1995) Eur. J. Biochem. 227, 757-771]. The first residue of mature epilancin K7 appears to be modified in a way that has not been described for any other lantibiotic so far. NMR experiments show that the elkA-encoded serine residue at position +1 of pro-epilancin K7 is modified to a 2-hydroxypropionyl residue in the mature protein.
New Book on Computer-Assisted Structure Elucidation
Source: Ryan's blog
New Book on Computer-Assisted Structure Elucidation
It's been a very long time since my last post. I apologize for that, but I can assure that my posting absence has not been due to lack of quality things to talk about. Hopefully this post will help me...
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02-15-2012 04:01 PM
New Book on Computer-Assisted Structure Elucidation
Source: Ryan's blog
New Book on Computer-Assisted Structure Elucidation
It's been a very long time since my last post. I apologize for that, but I can assure that my posting absence has not been due to lack of quality things to talk about. Hopefully this post will help me...
Read more...
nmrlearner
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0
02-15-2012 03:51 PM
[NMR paper] 3D NMR spectroscopy for resonance assignment and structure elucidation of proteins un
3D NMR spectroscopy for resonance assignment and structure elucidation of proteins under MAS: novel pulse schemes and sensitivity considerations.
Related Articles 3D NMR spectroscopy for resonance assignment and structure elucidation of proteins under MAS: novel pulse schemes and sensitivity considerations.
J Magn Reson. 2005 Mar;173(1):64-74
Authors: Heise H, Seidel K, Etzkorn M, Becker S, Baldus M
Two types of 3D MAS NMR experiments are introduced, which combine standard (NC,CC) transfer schemes with (1H,1H) mixing to simultaneously detect...
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11-24-2010 11:14 PM
[NMR paper] Protein structure elucidation from NMR proton densities.
Protein structure elucidation from NMR proton densities.
Related Articles Protein structure elucidation from NMR proton densities.
Proc Natl Acad Sci U S A. 2002 May 14;99(10):6713-8
Authors: Grishaev A, Llinas M
The NMR-generated foc proton density affords a template to which the molecule has to be fitted to derive the structure. Here we present a computational protocol that achieves this goal. H(N) atoms are readily recognizable from (1)H/(2)H exchange or (1)H/(15)N heteronuclear single quantum correlation (HSQC) experiments. The primary...
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11-24-2010 08:49 PM
[NMR paper] Primary structure, sequence-specific 1H-NMR assignments and secondary structure in so
Primary structure, sequence-specific 1H-NMR assignments and secondary structure in solution of bromelain inhibitor VI from pineapple stem.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif Related Articles Primary structure, sequence-specific 1H-NMR assignments and secondary structure in solution of bromelain inhibitor VI from pineapple stem.
Eur J Biochem. 1995 Sep 1;232(2):335-43
Authors: Hatano K, Kojima M, Tanokura M, Takahashi K
One of the...
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08-22-2010 03:50 AM
[NMR paper] Primary and NMR three-dimensional structure determination of a novel crustacean toxin
Primary and NMR three-dimensional structure determination of a novel crustacean toxin from the venom of the scorpion Centruroides limpidus limpidus Karsch.
Related Articles Primary and NMR three-dimensional structure determination of a novel crustacean toxin from the venom of the scorpion Centruroides limpidus limpidus Karsch.
Biochemistry. 1994 Sep 20;33(37):11135-49
Authors: Lebreton F, Delepierre M, RamÃ*rez AN, Balderas C, Possani LD
A crustacean-specific toxin from the Mexican scorpion Centruroides limpidus limpidus was purified, and its...
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08-22-2010 03:29 AM
[NMR paper] 13C NMR study of the mode of interaction in solution of the B fragment of staphylococ
13C NMR study of the mode of interaction in solution of the B fragment of staphylococcal protein A and the Fc fragments of mouse immunoglobulin G.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles 13C NMR study of the mode of interaction in solution of the B fragment of staphylococcal protein A and the Fc fragments of mouse immunoglobulin G.
FEBS Lett. 1993 Aug 9;328(1-2):49-54
Authors: Kato K, Gouda H, Takaha W, Yoshino A, Matsunaga C, Arata Y
The mode of interaction of...
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08-22-2010 03:01 AM
[NMR paper] Assignment of the 1H NMR spectrum and secondary structure elucidation of the single-s
Assignment of the 1H NMR spectrum and secondary structure elucidation of the single-stranded DNA binding protein encoded by the filamentous bacteriophage IKe.
Related Articles Assignment of the 1H NMR spectrum and secondary structure elucidation of the single-stranded DNA binding protein encoded by the filamentous bacteriophage IKe.
Biochemistry. 1992 Feb 4;31(4):1254-62
Authors: van Duynhoven JP, Folkers PJ, Prinse CW, Harmsen BJ, Konings RN, Hilbers CW
By means of 2D NMR techniques, all backbone resonances in the 1H NMR spectrum of the...