BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 06-03-2017, 11:49 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,733
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Dynamic nuclear polarization / solid-state NMR of membrane polypeptides. Free radical optimization for matrix-free lipid bilayer samples.

Dynamic nuclear polarization / solid-state NMR of membrane polypeptides. Free radical optimization for matrix-free lipid bilayer samples.

Related Articles Dynamic nuclear polarization / solid-state NMR of membrane polypeptides. Free radical optimization for matrix-free lipid bilayer samples.

Chemphyschem. 2017 Jun 02;:

Authors: Ouari O, Salnikov ES, Abel S, Karthikeyan G, Karoui H, Aussenac F, Tordo P, Bechinger B

Abstract
Dynamic Nuclear Polarization boosts the sensitivity of NMR spectroscopy by orders of magnitude making possible investigations previously out of scope. For MAS solid-state NMR studies the samples are typically mixed with biradicals dissolved in glass forming solvent and investigated at 100K. Here we present new biradical polarizing agents developed for matrix-free samples such as supported lipid bilayers, which are systems widely used for the investigation of membrane proteins of high biomedical importance. A series of 11 biradicals with different structure, geometry and physico-chemical properties was comprehensively tested for DNP performance in lipid bilayers, some of them developed specifically for membranes investigations. The membrane-anchored biradicals PyPol-C16, AMUPOL-cholesterol and bTurea-C16 exhibit improved g-tensor alignment, inter-radical distance and dispersion, and the highest signal enhancement factors so far obtained for matrix-free membranes or other matrix-free samples, potentially shortening NMR acquisition times by three orders of magnitude. Furthermore, optimal biradical-to-lipid ratio, sample deuteration and membrane lipid composition were determined under static and MAS conditions. In order to better rationalize biradical performance DNP enhancement was measured using the 13C and 15N signals of lipids and peptide, as a function of biradical concentration, DNP build-up time, resonance line width, quenching effect, microwave power and MAS frequency.


PMID: 28574169 [PubMed - as supplied by publisher]



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Impact of Ho3+-doping on 13C dynamic nuclear polarization using trityl OX063 free radical #DNPNMR
From The DNP-NMR Blog: Impact of Ho3+-doping on 13C dynamic nuclear polarization using trityl OX063 free radical #DNPNMR Kiswandhi, A., et al., Impact of Ho3+-doping on 13C dynamic nuclear polarization using trityl OX063 free radical. Phys. Chem. Chem. Phys., 2016. 18(31): p. 21351-21359. http://dx.doi.org/10.1039/C6CP03954E
nmrlearner News from NMR blogs 0 09-22-2016 10:41 PM
[NMR paper] Heating and temperature gradients of lipid bilayer samples induced by RF irradiation in MAS solid-state NMR experiments.
Heating and temperature gradients of lipid bilayer samples induced by RF irradiation in MAS solid-state NMR experiments. Related Articles Heating and temperature gradients of lipid bilayer samples induced by RF irradiation in MAS solid-state NMR experiments. Magn Reson Chem. 2016 May 9; Authors: Wang J, Zhang Z, Zhao W, Wang L, Yang J Abstract The MAS solid-state NMR has been a powerful technique for studying membrane proteins within the native-like lipid bilayer environment. In general, RF irradiation in MAS NMR experiments can...
nmrlearner Journal club 0 05-11-2016 08:04 PM
Solid-State NMR/Dynamic Nuclear Polarization of Polypeptides in Planar Supported Lipid Bilayers
From The DNP-NMR Blog: Solid-State NMR/Dynamic Nuclear Polarization of Polypeptides in Planar Supported Lipid Bilayers Salnikov, E.S., et al., Solid-State NMR/Dynamic Nuclear Polarization of Polypeptides in Planar Supported Lipid Bilayers. J Phys Chem B, 2015. 119(46): p. 14574-83. http://www.ncbi.nlm.nih.gov/pubmed/26487390
nmrlearner News from NMR blogs 0 03-02-2016 07:20 PM
Dynamic nuclear polarization of a glassy matrix prepared by solid state mechanochemical amorphization of crystalline substances
From The DNP-NMR Blog: Dynamic nuclear polarization of a glassy matrix prepared by solid state mechanochemical amorphization of crystalline substances This is a very interesting article describing the preparation of a sample for DNP by co-milling the analyte with the polarizing substrate. For a long time it was thought that just mechanically mixing the polarizing agent with the analyte will not result in a sample that is useful for DNP because the radical has to be mixed at an atomic level. Clearly this article demonstrate that this is not necessary. This will open up DNP to be used...
nmrlearner News from NMR blogs 0 02-09-2015 07:49 PM
Radical-free dynamic nuclear polarization using electronic defects in silicon
From The DNP-NMR Blog: Radical-free dynamic nuclear polarization using electronic defects in silicon Cassidy, M.C., et al., Radical-free dynamic nuclear polarization using electronic defects in silicon. Physical Review B, 2013. 87(16): p. 161306. http://link.aps.org/doi/10.1103/PhysRevB.87.161306
nmrlearner News from NMR blogs 0 09-19-2014 03:07 PM
Matrix-free dynamic nuclear polarization enables solid-state NMR (13)C-(13)C correlation spectroscopy of proteins at natural isotopic abundance
From The DNP-NMR Blog: Matrix-free dynamic nuclear polarization enables solid-state NMR (13)C-(13)C correlation spectroscopy of proteins at natural isotopic abundance Takahashi, H., S. Hediger, and G. De Paepe, Matrix-free dynamic nuclear polarization enables solid-state NMR (13)C-(13)C correlation spectroscopy of proteins at natural isotopic abundance. Chem Commun (Camb), 2013. 49(82): p. 9479-81. http://www.ncbi.nlm.nih.gov/pubmed/24013616
nmrlearner News from NMR blogs 0 11-21-2013 01:14 AM
[NMR paper] Lipid bilayer preparations of membrane proteins for oriented and magic-angle spinning solid-state NMR samples.
Lipid bilayer preparations of membrane proteins for oriented and magic-angle spinning solid-state NMR samples. Related Articles Lipid bilayer preparations of membrane proteins for oriented and magic-angle spinning solid-state NMR samples. Nat Protoc. 2013 Nov;8(11):2256-70 Authors: Das N, Murray DT, Cross TA Abstract
nmrlearner Journal club 0 10-27-2013 12:53 AM
[NMR paper] Matrix-free dynamic nuclear polarization enables solid-state NMR (13)C-(13)C correlation spectroscopy of proteins at natural isotopic abundance.
Matrix-free dynamic nuclear polarization enables solid-state NMR (13)C-(13)C correlation spectroscopy of proteins at natural isotopic abundance. Matrix-free dynamic nuclear polarization enables solid-state NMR (13)C-(13)C correlation spectroscopy of proteins at natural isotopic abundance. Chem Commun (Camb). 2013 Sep 6; Authors: Takahashi H, Hediger S, De Paëpe G Abstract We introduce a general approach for dynamic nuclear polarization (DNP) enhanced solid-state NMR that overcomes the current problems in DNP experiments caused by the use...
nmrlearner Journal club 0 09-10-2013 08:44 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 08:11 AM.


Map