A Discrete Three-Layer Stack Aggregate of a LinearPorphyrin Tetramer: Solution-Phase Structure Elucidation by NMR andX-ray Scattering

		BioNMR > Educational resources > Journal club
A Discrete Three-Layer Stack Aggregate of a LinearPorphyrin Tetramer: Solution-Phase Structure Elucidation by NMR andX-ray Scattering

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-16-2013, 08:28 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

A Discrete Three-Layer Stack Aggregate of a LinearPorphyrin Tetramer: Solution-Phase Structure Elucidation by NMR andX-ray Scattering

A Discrete Three-Layer Stack Aggregate of a LinearPorphyrin Tetramer: Solution-Phase Structure Elucidation by NMR andX-ray Scattering

Marie Hutin, Johannes K. Sprafke, Barbara Odell, Harry L. Anderson and Tim D. W. Claridge

Journal of the American Chemical Society
DOI: 10.1021/ja406015r

Source: Journal of the American Chemical Society

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
New Book on Computer-Assisted Structure Elucidation Source: Ryan's blog New Book on Computer-Assisted Structure Elucidation It's been a very long time since my last post. I apologize for that, but I can assure that my posting absence has not been due to lack of quality things to talk about. Hopefully this post will help me... Read more...	nmrlearner	Books	0	02-15-2012 04:01 PM
New Book on Computer-Assisted Structure Elucidation Source: Ryan's blog New Book on Computer-Assisted Structure Elucidation It's been a very long time since my last post. I apologize for that, but I can assure that my posting absence has not been due to lack of quality things to talk about. Hopefully this post will help me... Read more...	nmrlearner	Books	0	02-15-2012 03:51 PM
[Question from NMRWiki Q&A forum] Dimer and tetramer equilibrium identification of protein with NMR experiments Dimer and tetramer equilibrium identification of protein with NMR experiments Dear nmr wikiers could you please let me know is their any nmr experment to identification of Dimer and tetramer equilibrium of protein with NMR experiments ? thanks in advance . Regards	nmrlearner	News from other NMR forums	0	06-22-2011 03:51 PM
[NMR paper] Protein structure elucidation from NMR proton densities. Protein structure elucidation from NMR proton densities. Related Articles Protein structure elucidation from NMR proton densities. Proc Natl Acad Sci U S A. 2002 May 14;99(10):6713-8 Authors: Grishaev A, Llinas M The NMR-generated foc proton density affords a template to which the molecule has to be fitted to derive the structure. Here we present a computational protocol that achieves this goal. H(N) atoms are readily recognizable from (1)H/(2)H exchange or (1)H/(15)N heteronuclear single quantum correlation (HSQC) experiments. The primary...	nmrlearner	Journal club	0	11-24-2010 08:49 PM
[NMRwiki tweet] nmrwiki: RT @powertwenty: @mw44118 ...you could implement a stack-overflow site for f nmrwiki: RT @powertwenty: @mw44118 ...you could implement a stack-overflow site for feedback using Django and Askbot (http://packages.python.org/ ... nmrwiki: RT @powertwenty: @mw44118 ...you could implement a stack-overflow site for feedback using Django and Askbot (http://packages.python.org/ ... Source: NMRWiki tweets	nmrlearner	Twitter NMR	0	09-14-2010 03:44 AM
[NMR paper] Low-affinity platelet factor 4 1H NMR derived aggregate equilibria indicate a physiol Low-affinity platelet factor 4 1H NMR derived aggregate equilibria indicate a physiologic preference for monomers over dimers and tetramers. Related Articles Low-affinity platelet factor 4 1H NMR derived aggregate equilibria indicate a physiologic preference for monomers over dimers and tetramers. Biochemistry. 1991 Jan 29;30(4):925-34 Authors: Mayo KH Low-affinity platelet factor 4 (LA-PF4), unlike another related, sequentially homologous (about 50%) platelet-specific protein, platelet factor 4 (PF4), is an active mitogenic and chemotactic...	nmrlearner	Journal club	0	08-21-2010 11:16 PM
A structure refinement protocol combining NMR residual dipolar couplings and small angle scattering restraints A structure refinement protocol combining NMR residual dipolar couplings and small angle scattering restraints F. Gabel, B. Simon, M. Nilges, M. Petoukhov, D. Svergun and M. Sattler Journal of Biomolecular NMR; 2008; 41(4); pp 199-208 Abstract: We present the implementation of a target function based on Small Angle Scattering data (Gabel et al. Eur Biophys J 35(4):313–327, 2006) into the Crystallography and NMR Systems (CNS) and demonstrate its utility in NMR structure calculations by simultaneous application of small angle scattering (SAS) and residual dipolar coupling (RDC)...	Abe	Journal club	0	09-21-2008 11:30 PM
Multidomain Protein Structures from NMR & Solution Small-Angle X-ray Scattering http://pubs.acs.org/isubscribe/journals/jacsat/127/i47/figures/ja054342mn00001.gif Refinement of Multidomain Protein Structures by Combination of Solution Small-Angle X-ray Scattering and NMR Data Alexander Grishaev,* Justin Wu, Jill Trewhella, and Ad Bax* Contribution from the Laboratory of Chemical Physics, NIDDK, National Institutes of Health, Bethesda, Maryland 20892-0520, Department of Biochemistry, The Ohio State University, Columbus, Ohio 43210, and Department of Chemistry, University of Utah, Salt Lake City, Utah 84112-0850 J. Am. Chem. Soc.; 2005; 127(47) pp 16621 -...	nmrlearner	Journal club	0	01-12-2006 08:23 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off