BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 02-27-2013, 06:45 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,780
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Direct Observation of the Ion-Pair Dynamics at a Protein–DNAInterface by NMR Spectroscopy

Direct Observation of the Ion-Pair Dynamics at a Protein–DNAInterface by NMR Spectroscopy

Kurtis M. Anderson, Alexandre Esadze, Mariappan Manoharan, Rafael Bru?schweiler, David G. Gorenstein and Junji Iwahara



Journal of the American Chemical Society
DOI: 10.1021/ja312314b




Source: Journal of the American Chemical Society
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] Direct observation of the ion-pair dynamics at a protein-DNA interface by NMR spectroscopy.
Direct observation of the ion-pair dynamics at a protein-DNA interface by NMR spectroscopy. Related Articles Direct observation of the ion-pair dynamics at a protein-DNA interface by NMR spectroscopy. J Am Chem Soc. 2013 Feb 14; Authors: Anderson KM, Esadze A, Manoharan M, Bruschweiler R, Gorenstein DG, Iwahara J Abstract Ion pairing is one of the most fundamental chemical interactions and is essential for molecular recognition by biological macromolecules. From an experimental standpoint, very little is known to date about ion-pair...
nmrlearner Journal club 0 02-15-2013 05:21 PM
Rotational velocity rescaling of molecular dynamics trajectories for direct prediction of protein NMR relaxation
Rotational velocity rescaling of molecular dynamics trajectories for direct prediction of protein NMR relaxation July 2012 Publication year: 2012 Source:Biophysical Chemistry, Volumes 168–169</br> </br> Rotational velocity rescaling (RVR) enables 15N relaxation data for the anisotropically tumbling B3 domain of Protein G (GB3) to be accurately predicted from 1?s of constant energy molecular dynamics simulation without recourse to any system-specific adjustable parameters. Superposition of adjacent trajectory frames yields the unique rotation axis and angle of rotation...
nmrlearner Journal club 0 02-03-2013 10:13 AM
[NMR paper] Direct NMR observation of a substrate protein bound to the chaperonin GroEL.
Direct NMR observation of a substrate protein bound to the chaperonin GroEL. Related Articles Direct NMR observation of a substrate protein bound to the chaperonin GroEL. Proc Natl Acad Sci U S A. 2005 Sep 6;102(36):12748-53 Authors: Horst R, Bertelsen EB, Fiaux J, Wider G, Horwich AL, Wüthrich K The reaction cycle and the major structural states of the molecular chaperone GroEL and its cochaperone, GroES, are well characterized. In contrast, very little is known about the nonnative states of the substrate polypeptide acted on by the...
nmrlearner Journal club 0 12-01-2010 06:56 PM
[NMR paper] Direct observation and characterization of DMPC/DHPC aggregates under conditions rele
Direct observation and characterization of DMPC/DHPC aggregates under conditions relevant for biological solution NMR. Related Articles Direct observation and characterization of DMPC/DHPC aggregates under conditions relevant for biological solution NMR. Biochim Biophys Acta. 2004 Aug 30;1664(2):241-56 Authors: van Dam L, Karlsson G, Edwards K We have used cryo-transmission electron microscopy (cryo-TEM) for inspection of aggregates formed by dimyristoylphosphatidylcholine (DMPC) and dihexanoylphosphatidylcholine (DHPC) in aqueous solution at...
nmrlearner Journal club 0 11-24-2010 10:01 PM
[NMR paper] Characterization of the EGF-like module pair 3-4 from vitamin K-dependent protein S u
Characterization of the EGF-like module pair 3-4 from vitamin K-dependent protein S using NMR spectroscopy reveals dynamics on three separate time scales and extensive effects from calcium binding. Related Articles Characterization of the EGF-like module pair 3-4 from vitamin K-dependent protein S using NMR spectroscopy reveals dynamics on three separate time scales and extensive effects from calcium binding. Biochemistry. 2000 Dec 26;39(51):15742-56 Authors: Muranyi A, Evenäs J, Stenberg Y, Stenflo J, Drakenberg T Protein S, a cofactor of...
nmrlearner Journal club 0 11-19-2010 08:29 PM
Direct observation of minimum-sized amyloid fibrils using solution NMR spectroscopy.
Direct observation of minimum-sized amyloid fibrils using solution NMR spectroscopy. Related Articles Direct observation of minimum-sized amyloid fibrils using solution NMR spectroscopy. Protein Sci. 2010 Oct 8; Authors: Yoshimura Y, Sakurai K, Lee YH, Ikegami T, Chatani E, Naiki H, Goto Y It is challenging to investigate the structure and dynamics of amyloid fibrils at the residue and atomic resolution due to their high molecular weight and heterogeneous properties. Here, we employed solution nuclear magnetic resonance (NMR) spectroscopy to...
nmrlearner Journal club 0 10-12-2010 02:52 PM
[NMR paper] Direct observation and elucidation of the structures of aged and nonaged phosphorylat
Direct observation and elucidation of the structures of aged and nonaged phosphorylated cholinesterases by 31P NMR spectroscopy. Related Articles Direct observation and elucidation of the structures of aged and nonaged phosphorylated cholinesterases by 31P NMR spectroscopy. Biochemistry. 1993 Dec 14;32(49):13441-50 Authors: Segall Y, Waysbort D, Barak D, Ariel N, Doctor BP, Grunwald J, Ashani Y 31P NMR spectroscopy of butyrylcholinesterase (BChE), acetylcholinesterase (AChE), and chymotrypsin (Cht) inhibited by pinacolyl...
nmrlearner Journal club 0 08-22-2010 03:01 AM
[NMR paper] Direct observation of cell wall structure in living plant tissues by solid-state C NM
Direct observation of cell wall structure in living plant tissues by solid-state C NMR spectroscopy. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Direct observation of cell wall structure in living plant tissues by solid-state C NMR spectroscopy. Plant Physiol. 1990 Jan;92(1):61-5 Authors: Jarvis MC, Apperley DC Solid-state (13)C nuclear magnetic resonance (NMR) spectra of the following intact plant tissues were recorded by the crosspolarization...
nmrlearner Journal club 0 08-21-2010 10:48 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 06:00 AM.


Map