BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 02-27-2018, 12:30 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,777
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Direct Observation of CH/CH van der Waals Interactions in Proteins by NMR.

Direct Observation of CH/CH van der Waals Interactions in Proteins by NMR.

Direct Observation of CH/CH van der Waals Interactions in Proteins by NMR.

J Am Chem Soc. 2018 Feb 26;:

Authors: Li J, Wang Y, An L, Chen J, Yao L

Abstract
van der Waals interactions are important to protein stability and function. These interactions are usually identified empirically based on protein 3D structures. In this work, we performed a solution nuclear magnetic resonance (NMR) spectroscopy study of van der Waals interactions by detecting the through-space vdwJCC-coupling between protein aliphatic side chain groups. Specifically, vdwJCC-coupling values up to ~0.5 Hz were obtained between the methyl and nearby aliphatic groups in protein GB3, providing direct experimental evidence for the van der Waals interactions. Quantum mechanical calculations suggest that the J-coupling is correlated with the exchange-repulsion term of van der Waals interaction. NMR detection of vdwJCC-coupling offers a new tool to characterize such interactions in proteins.


PMID: 29480712 [PubMed - as supplied by publisher]



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
DirectObservation of CH/CH van der Waals Interactionsin Proteins by NMR
DirectObservation of CH/CH van der Waals Interactionsin Proteins by NMR Jingwen Li, Yefei Wang, Liaoyuan An, Jingfei Chen and Lishan Yao http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.7b13345/20180226/images/medium/ja-2017-133455_0005.gif Journal of the American Chemical Society DOI: 10.1021/jacs.7b13345 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/bET5l1H4JcY
nmrlearner Journal club 0 02-27-2018 12:30 PM
[NMR paper] Observation of scalar nuclear spin-spin coupling in van der Waals complexes.
From Mendeley Biomolecular NMR group: Observation of scalar nuclear spin-spin coupling in van der Waals complexes. Proceedings of the National Academy of Sciences of the United States of America (2012). Volume: 109, Issue: 31. Pages: 12393-7. Micah P Ledbetter, Giacomo Saielli, Alessandro Bagno, Nhan Tran, Michael V Romalis et al. Scalar couplings between covalently bound nuclear spins are a ubiquitous feature in nuclear magnetic resonance (NMR) experiments, imparting valuable information to NMR spectra regarding molecular structure and conformation. Such couplings arise due to a...
nmrlearner Journal club 0 09-09-2014 03:44 PM
[NMR paper] (13)C (?) decoupling during direct observation of carbonyl resonances in solution NMR of isotopically enriched proteins.
(13)C (?) decoupling during direct observation of carbonyl resonances in solution NMR of isotopically enriched proteins. Related Articles (13)C (?) decoupling during direct observation of carbonyl resonances in solution NMR of isotopically enriched proteins. J Biomol NMR. 2014 Aug 17; Authors: Ying J, Li F, Lee JH, Bax A Abstract Direct detection of (13)C can be advantageous when studying uniformly enriched proteins, in particular for paramagnetic proteins or when hydrogen exchange with solvent is fast. A scheme recently...
nmrlearner Journal club 0 08-19-2014 11:21 AM
13Cα decoupling during direct observation of carbonyl resonances in solution NMR of isotopically enriched proteins
13Cα decoupling during direct observation of carbonyl resonances in solution NMR of isotopically enriched proteins Abstract Direct detection of 13C can be advantageous when studying uniformly enriched proteins, in particular for paramagnetic proteins or when hydrogen exchange with solvent is fast. A scheme recently introduced for long-observation-window band-selective homonuclear decoupling in solid state NMR, LOW-BASHD (Struppe et al. in J Magn Reson 236:89â??94, 2013) is shown to be effective for 13Cα decoupling during direct 13Câ?² observation in...
nmrlearner Journal club 0 08-16-2014 10:26 PM
[NMR paper] Observation of scalar nuclear spin-spin coupling in van der Waals complexes.
From Mendeley Biomolecular NMR group: Observation of scalar nuclear spin-spin coupling in van der Waals complexes. Proceedings of the National Academy of Sciences of the United States of America (2012). Volume: 109, Issue: 31. Pages: 12393-7. Micah P Ledbetter, Giacomo Saielli, Alessandro Bagno, Nhan Tran, Michael V Romalis et al. Scalar couplings between covalently bound nuclear spins are a ubiquitous feature in nuclear magnetic resonance (NMR) experiments, imparting valuable information to NMR spectra regarding molecular structure and conformation. Such couplings arise due to a...
nmrlearner Journal club 0 10-17-2013 12:49 PM
[NMR paper] Observation of scalar nuclear spin-spin coupling in van der Waals complexes.
From Mendeley Biomolecular NMR group: Observation of scalar nuclear spin-spin coupling in van der Waals complexes. Proceedings of the National Academy of Sciences of the United States of America (2012). Volume: 109, Issue: 31. Pages: 12393-7. Micah P Ledbetter, Giacomo Saielli, Alessandro Bagno, Nhan Tran, Michael V Romalis et al. Scalar couplings between covalently bound nuclear spins are a ubiquitous feature in nuclear magnetic resonance (NMR) experiments, imparting valuable information to NMR spectra regarding molecular structure and conformation. Such couplings arise due to a...
nmrlearner Journal club 0 11-22-2012 11:49 AM
[NMR paper] Observation of scalar nuclear spin-spin coupling in van der Waals complexes.
From Mendeley Biomolecular NMR group: Observation of scalar nuclear spin-spin coupling in van der Waals complexes. Proceedings of the National Academy of Sciences of the United States of America (2012). Volume: 109, Issue: 31. Pages: 12393-7. Micah P Ledbetter, Giacomo Saielli, Alessandro Bagno, Nhan Tran, Michael V Romalis et al. Scalar couplings between covalently bound nuclear spins are a ubiquitous feature in nuclear magnetic resonance (NMR) experiments, imparting valuable information to NMR spectra regarding molecular structure and conformation. Such couplings arise due to a...
nmrlearner Journal club 0 10-29-2012 12:57 AM
[NMR paper] Direct observation and elucidation of the structures of aged and nonaged phosphorylat
Direct observation and elucidation of the structures of aged and nonaged phosphorylated cholinesterases by 31P NMR spectroscopy. Related Articles Direct observation and elucidation of the structures of aged and nonaged phosphorylated cholinesterases by 31P NMR spectroscopy. Biochemistry. 1993 Dec 14;32(49):13441-50 Authors: Segall Y, Waysbort D, Barak D, Ariel N, Doctor BP, Grunwald J, Ashani Y 31P NMR spectroscopy of butyrylcholinesterase (BChE), acetylcholinesterase (AChE), and chymotrypsin (Cht) inhibited by pinacolyl...
nmrlearner Journal club 0 08-22-2010 03:01 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 06:19 PM.


Map