Higher sensitivity of NMR spectrometers and novel isotopic labeling schemes have ushered the development of rapid data acquisition methodologies, improving the time resolution with which NMR data can be acquired. For nucleic acids, longitudinal relaxation optimization in conjunction with Ernst angle excitation (SOFAST-HMQC) for imino protons, in addition to rendering rapid pulsing, has been demonstrated to yield significant improvements in sensitivity per unit time. Extending such methodology to other spins offers a viable prospect to measure additional chemical shifts, thereby broadening their utilization for various applications. Here, we introduce the 2D [13C, 1H] aromatic SOFAST-HMQC that results in overall sensitivity gain of 1.4- to 1.7-fold relative to the conventional HMQC and can also be extended to yield long-range heteronuclear chemical shifts such as the adenine imino nitrogens N1, N3, N7 and N9. The applications of these experiments range from monitoring real-time biochemical processes, drug/ligand screening, and to collecting data at very low sample concentration and/or in cases where isotopic enrichment cannot be achieved.
[NMRpipe Yahoo group] Re: Issues processing 2D SoFast HMQC
Re: Issues processing 2D SoFast HMQC
Jana, Despite ND0 being 1 for SoFast and 2 for regular HSQC, I decided to try your suggestion anyway. One more time processing this data set surely wouldn't
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09-06-2012 04:08 AM
[NMRpipe Yahoo group] Re: Issues processing 2D SoFast HMQC
Re: Issues processing 2D SoFast HMQC
Great suggestion! However, on our end ND0 is set to 1 for the SoFast HMQC and set to 2 for the regular HSQCs. So this does not seem to be the issue. Nicole
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09-06-2012 04:08 AM
[NMRpipe Yahoo group] Re: Issues processing 2D SoFast HMQC
Re: Issues processing 2D SoFast HMQC
Hi Nichole, Iam extremely sorry about the previous post. if you have mistakenly used nd0=2 for sfhmqc, try changing this line in the nmrPipe script from -xSW
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09-05-2012 03:35 AM
[NMRpipe Yahoo group] Re: Issues processing 2D SoFast HMQC
Re: Issues processing 2D SoFast HMQC
Hi Nicole, Pls check your sfhmqc experimental parameter 'nd0' ( using the command 'ased'). For sfhmqc the nd0 should be 1( for conventional HSQC nd0=2 ). If
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09-05-2012 03:35 AM
[NMRpipe Yahoo group] Re: Issues processing 2D SoFast HMQC
Re: Issues processing 2D SoFast HMQC
Hi Jana, I'm sorry, I should have been more clear in my post. I do use States-TPPI when processing the SoFast data. (I have also tried a plethora of other
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09-05-2012 03:35 AM
[NMRpipe Yahoo group] Re: Issues processing 2D SoFast HMQC
Re: Issues processing 2D SoFast HMQC
Hi Nicole, The yMode is not Echo-AntiEcho for the ppg sfhmqcf3gpph, it should be -yMODE States-TPPI Pls check the first line:- -bad 0.0 -noaswap -DMX -decim
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09-05-2012 03:35 AM
[NMRpipe Yahoo group] Issues processing 2D SoFast HMQC
Issues processing 2D SoFast HMQC
Hello all, I am experiencing a problem similar to one posted about in June 2008 (message ID: 1752), only the solutions given then aren't working for me.
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09-05-2012 03:35 AM
15N SOFAST-HMQC to study fast H-D exchange
Very Fast Two-Dimensional NMR Spectroscopy for Real-Time Investigation of Dynamic Events in Proteins on the Time Scale of Seconds
Paul Schanda and Bernhard Brutscher
J. Am. Chem. Soc.; 2005; 127(22) pp 8014 - 8015
http://pubs.acs.org/isubscribe/journals/jacsat/127/i22/figures/ja051306en00001.gif
Abstract:
We demonstrate for different protein samples that 2D 1H-15N correlation NMR spectra can be recorded in a few seconds of acquisition time using a new band-selective optimized flip-angle short-transient heteronuclear multiple quantum coherence experiment. This has enabled us to...