NMR paper Dataset of NMR-spectra pyrrolyl- and indolylazines and evidence of their ability to induce heat shock genes expression in human neurons

		BioNMR > Educational resources > Journal club
[NMR paper] Dataset of NMR-spectra pyrrolyl- and indolylazines and evidence of their ability to induce heat shock genes expression in human neurons

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

11-26-2021, 07:56 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Dataset of NMR-spectra pyrrolyl- and indolylazines and evidence of their ability to induce heat shock genes expression in human neurons

Dataset of NMR-spectra pyrrolyl- and indolylazines and evidence of their ability to induce heat shock genes expression in human neurons

These data are related to our previous paper "Synthesis and approbation of new neuroprotective chemicals of pyrrolyl- and indolylazine classes in a cell model of Alzheimer's disease" (Dutysheva et al., 2021), in which we demonstrate neuroprotective abilities of pyrrolyl- and indolylazines in a cell model of Alzheimer's disease. Using a novel procedure of photocatalysis we have synthesized a group of new compounds. The current article presents nuclear magnetic resonance spectra including...

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Insights into heat shock protein machinery could point to interventions for neurodegenerative disease - pnas.org Insights into heat shock protein machinery could point to interventions for neurodegenerative disease - pnas.org Insights into heat shock protein machinery could point to interventions for neurodegenerative disease pnas.org Read here	nmrlearner	Online News	0	11-26-2020 07:18 AM
Comparative Membrane Proteomics Reveals a Nonannotated E. coli Heat Shock Protein Comparative Membrane Proteomics Reveals a Nonannotated E. coli Heat Shock Protein http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00864/20171017/images/medium/bi-2017-008644_0005.gif Biochemistry DOI: 10.1021/acs.biochem.7b00864 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/Mb9khleBWtE More...	nmrlearner	Journal club	0	10-18-2017 01:35 AM
Specific Binding of Tetratricopeptide Repeat Proteinsto Heat Shock Protein 70 (Hsp70) and Heat Shock Protein 90 (Hsp90)Is Regulated by Affinity and Phosphorylation Specific Binding of Tetratricopeptide Repeat Proteinsto Heat Shock Protein 70 (Hsp70) and Heat Shock Protein 90 (Hsp90)Is Regulated by Affinity and Phosphorylation http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.5b00801/20151125/images/medium/bi-2015-00801d_0008.gif Biochemistry DOI: 10.1021/acs.biochem.5b00801 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/YvFol5JSODc More...	nmrlearner	Journal club	0	11-26-2015 12:22 PM
Researchers uncover how small heat shock protein interacts with other proteins - News-Medical.net Researchers uncover how small heat shock protein interacts with other proteins - News-Medical.net <img alt="" height="1" width="1"> Researchers uncover how small heat shock protein interacts with other proteins News-Medical.net ... in uncovering precisely this mechanism. Using a refined procedure of solid-state nuclear magnetic resonance spectroscopy (solid-state NMR), they managed, for the first time ever, to identify the sites in the alpha-B-crystallin that attach to the ... and more » Read here	nmrlearner	Online News	0	10-16-2015 12:49 AM
Small Heat Shock Protein As Model for Alzheimer Medication - Scicasts (press release) (blog) Small Heat Shock Protein As Model for Alzheimer Medication - Scicasts (press release) (blog) http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcQ9moy7bI6-CN006Z0Ht_YPEwpfVDX7qETMgRnwpztgVdqHvywdHobvblWhtaMWJLlFb1Qq4Dw Scicasts (press release) (blog) <img alt="" height="1" width="1"> Small Heat Shock Protein As Model for Alzheimer Medication Scicasts (press release) (blog) As Reif and his colleagues have discovered, it binds protein types that, unlike the beta-amyloid, clump together in an unordered manner. The researchers will be supported by the new NMR Center that is currently...	nmrlearner	Online News	0	10-14-2015 12:47 PM
New Alzheimer's treatments may arise from modeling 'heat shock proteins' - Medical News Today New Alzheimer's treatments may arise from modeling 'heat shock proteins' - Medical News Today http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcSJynzcKblVeZYmd6Hg316eXCekMeseTFC-l6eQ1GijAxT4CVL48l8lLOo8lTJenbQdHBn1vnKn Medical News Today <img alt="" height="1" width="1"> New Alzheimer's treatments may arise from modeling 'heat shock proteins' Medical News Today Using solid-state nuclear magnetic resonance (NMR) spectroscopy, the researchers identified the exact sites in the alpha-B-crystallin structure that attach to the beta-amyloid. The achievement is the result of...	nmrlearner	Online News	0	10-13-2015 06:03 PM
Small heat shock protein as model for Alzheimer's medication - News-Medical.net Small heat shock protein as model for Alzheimer's medication - News-Medical.net http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcSs_jrKR5ICaGu4iH3hpUBJnSF5w-iMfF0Qy_VGXVCtMo1BC7oe7a7d_oQiN2r1yXeRz2_shIs News-Medical.net <img alt="" height="1" width="1"> Small heat shock protein as model for Alzheimer's medication News-Medical.net Using a refined procedure of solid-state nuclear magnetic resonance spectroscopy (solid-state NMR), they managed, for the first time ever, to identify the sites in the alpha-B-crystallin that attach to the beta-amyloid. It is the first direct...	nmrlearner	Online News	0	10-13-2015 05:51 AM
[NMR paper] Yeast heat shock transcription factor N-terminal activation domains are unstructured Yeast heat shock transcription factor N-terminal activation domains are unstructured as probed by heteronuclear NMR spectroscopy. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Yeast heat shock transcription factor N-terminal activation domains are unstructured as probed by heteronuclear NMR spectroscopy. Protein Sci. 1996 Feb;5(2):262-9...	nmrlearner	Journal club	0	08-22-2010 02:27 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off