Related ArticlesThe CrIIL reduction of [2Fe-2S] ferredoxins and site of attachment of CrIII using 1H NMR and site-directed mutagenesis.
Inorg Chem. 2000 Apr 17;39(8):1755-64
Authors: Im SC, Worrall JA, Liu G, Aliverti A, Zanetti G, Luchinat C, Bertini I, Sykes AG
The recently reported NMR solution structure of FeIIIFeIII parsley FdI has made possible 2D NOESY NMR studies to determine the point of attachment of CrIIIL in FeIIIFeIII...CrIIIL. The latter Cr-modified product was obtained by reduction of FeIIIFeIII parsley and spinach FdI forms with [Cr(15-aneN4) (H2O)2]2+ (15-aneN4 = 1,4,8,12-tetraazacyclopentadecane), referred to here as CrIIL, followed by air oxidation and chromatographic purification. From a comparison of NMR cross-peak intensities of native and Cr-modified proteins, two surface sites designated A and B, giving large paramagnetic CrIIIL broadening of a number of amino acid peaks, have been identified. The effects at site A (residues 19-22, 27, and 30) are greater than those at site B (residues 92-94 and 96), which is on the opposite side of the protein. From metal (ICP-AES) and electrospray ionization mass spectrometry (EIMS) analyses on the Cr-modified protein, attachment of a single CrIIIL only is confirmed for both parsley and spinach FdI and FdII proteins. Electrostatic interaction of the 3+ CrIIIL center covalently attached to one protein molecule (charge approximately -18) with a second (like) molecule provides an explanation for the involvement of two regions. Thus for 3-4 mM FeIIIFeIII...CrIIIL solutions used in NMR studies (CrIIIL attached at A), broadening effects due to electrostatic interactions at B on a second molecule are observed. Experiments with the Cys18Ala spinach FdI variant have confirmed that the previously suggested Cys-18 at site A is not the site of CrIIIL attachment. Line broadening at Val-22 of A gives the largest effect, and CrIIIL attachment at one or more adjacent (conserved) acidic residues in this region is indicated. The ability of CrIIL to bind in some (parsley and spinach) but not all cases (Anabaena variabilis) suggests that intramolecular H-bonding of acidic residues at A is relevant. The parsley and spinach FeIIFeIII...CrIIIL products undergo a second stage of reduction with the formation of FeIIFeII...CrIIIL. However, the spinach Glu92Ala (site B) variant undergoes only the first stage of reduction, and it appears that Glu-92 is required for the second stage of reduction to occur. A sample of CrIIIL-modified parsley FeIIIFeIII Fd is fully active as an electron carrier in the NADPH-cytochrome c reductase reaction catalyzed by ferredoxin-NADP+ reductase.
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data [1 Attachment]
Re: 3D cube representation of NMRPipe data
Looks pretty awesome! Thanks for the script! Is there a possibility to save the image somehow? justin -- Justin Lecher Institute of Complex Systems ICS-6
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03-21-2011 07:27 PM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data [1 Attachment]
Re: 3D cube representation of NMRPipe data
Thanks a lot! I will try the script and let you know if I have problems! Best regards Stefano On Mar 20, 2011, at 5:02 PM, Frank Delaglio wrote:
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03-21-2011 07:16 AM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data [1 Attachment]
Re: 3D cube representation of NMRPipe data
Try downloading and installing the latest version of NMRPipe, which includes an updated version of nmrCube.tcl and other items that this script requires. As
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[NMRpipe Yahoo group] Re: virtual fun with NMRPipe [1 Attachment]
Re: virtual fun with NMRPipe
One more thing ... if you can't easily see the yahoogroups attachment of the illustration, you can also find it here:
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11-30-2010 08:11 AM
[NMR paper] Reduction of RF-induced sample heating with a scroll coil resonator structure for sol
Reduction of RF-induced sample heating with a scroll coil resonator structure for solid-state NMR probes.
Related Articles Reduction of RF-induced sample heating with a scroll coil resonator structure for solid-state NMR probes.
J Magn Reson. 2005 Mar;173(1):40-8
Authors: Stringer JA, Bronnimann CE, Mullen CG, Zhou DH, Stellfox SA, Li Y, Williams EH, Rienstra CM
Heating due to high power 1H decoupling limits the experimental lifetime of protein samples for solid-state NMR (SSNMR). Sample deterioration can be minimized by lowering the...
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11-24-2010 11:14 PM
[NMR paper] Optical, EPR, and 1H NMR spectroscopy of serine-ligated [2Fe-2S] ferredoxins produced
Optical, EPR, and 1H NMR spectroscopy of serine-ligated ferredoxins produced by site-directed mutagenesis of cysteine residues in recombinant Anabaena 7120 vegetative ferredoxin.
Related Articles Optical, EPR, and 1H NMR spectroscopy of serine-ligated ferredoxins produced by site-directed mutagenesis of cysteine residues in recombinant Anabaena 7120 vegetative ferredoxin.
Biochemistry. 1994 Mar 22;33(11):3155-64
Authors: Cheng H, Xia B, Reed GH, Markley JL
Anabaena 7120 vegetative ferredoxin is a plant-type ferredoxin that contains only...
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08-22-2010 03:33 AM
[NMR paper] Optical, EPR, and 1H NMR spectroscopy of serine-ligated [2Fe-2S] ferredoxins produced
Optical, EPR, and 1H NMR spectroscopy of serine-ligated ferredoxins produced by site-directed mutagenesis of cysteine residues in recombinant Anabaena 7120 vegetative ferredoxin.
Related Articles Optical, EPR, and 1H NMR spectroscopy of serine-ligated ferredoxins produced by site-directed mutagenesis of cysteine residues in recombinant Anabaena 7120 vegetative ferredoxin.
Biochemistry. 1994 Mar 22;33(11):3155-64
Authors: Cheng H, Xia B, Reed GH, Markley JL
Anabaena 7120 vegetative ferredoxin is a plant-type ferredoxin that contains only...
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[NMR paper] NMR studies of Azotobacter vinelandii and Pseudomonas putida seven-iron ferredoxins.
NMR studies of Azotobacter vinelandii and Pseudomonas putida seven-iron ferredoxins. Direct assignment of beta-cysteinyl carbon NMR resonances and further proton NMR assignments of cysteinyl and aromatic resonances.
Related Articles NMR studies of Azotobacter vinelandii and Pseudomonas putida seven-iron ferredoxins. Direct assignment of beta-cysteinyl carbon NMR resonances and further proton NMR assignments of cysteinyl and aromatic resonances.
J Biol Chem. 1992 Apr 25;267(12):8073-80
Authors: Cheng H, Grohmann K, Sweeney W
Ferredoxins are...