Related ArticlesCorrelation between drug release kinetics from proteineous matrix and matrix structure: EPR and NMR study.
J Pharm Sci. 2000 Mar;89(3):365-81
Authors: Katzhendler I, Mäder K, Friedman M
The present study was conducted in order to probe the microstructure, microviscosity, and hydration properties of matrices containing two model drugs, naproxen sodium (NS) and naproxen (N), and egg albumin (EA) as matrix carrier. The results suggested that N release from EA matrix was controlled by a bulk erosion mechanism in combination with additional processes (crystal dissolution/crystallization rate) compared with NS matrix, which behaved as a non-erodible matrix and drug release occurred by diffusion through the gel. Using EPR technique it has been shown that incorporating NS into EA matrix strongly influences the microstructure of the protein gel, and hence the transport of the penetrant within the matrix, compared with matrices containing N. The presence of NS increased the protein chain mobility and hydration which supports our previous results showing that NS cause unfolding of EA. In contrast, N caused only marginal effect on EA chain mobility. The gel formed in EA/NS matrices was more porous compared with EA/N matrices as revealed by the lower rotational correlation time of PCA (lower microviscosity) in EA/NS matrices compared with EA/N. However, EA/N gelled matrices were more heterogeneous, i.e., containing a higher number of components having different mobility. The T(1) and T(2) relaxation studies by NMR provided an additional support for the higher chain hydration in EA/NS matrices compared with EA/N as indicated by the higher relaxation rates in the gelled matrices. Internal pH measurements by EPR revealed that the micro-pH inside 100% EA and 50/50 EA/N matrices were lower than 50/50 EA/NS matrices and in all cases lower than the penetrating buffer pH. The lower pH compartment formed in N matrices affected N solubility and crystal dissolution rate, which can explain its lower release rate compared with EA, from the same formulation. The EPR and NMR data supports our findings that NS caused unfolding of the protein, affected matrix structure, and converted it to a hydrophobic non-erodible matrix compared with EA/N matrix in which the native properties of EA were mainly retained.
[Question from NMRWiki Q&A forum] converting nmrpipe processed data (.ft3 files) to felix matrix
converting nmrpipe processed data (.ft3 files) to felix matrix
I am trying to convert the .ft3 files into a felix matrix using the pipe2mat conversion filter in felix but it doesn't seem to work properly - it does generate a matrix but the size of the matrix is too small and Felix freezes if I try to open it. Does anyone have a script to do so? or maybe you got the felix filter to work?
Check if somebody has answered this question on NMRWiki QA forum
nmrlearner
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12-07-2010 09:54 AM
[NMR paper] NMR-based modification of matrix metalloproteinase inhibitors with improved bioavaila
NMR-based modification of matrix metalloproteinase inhibitors with improved bioavailability.
Related Articles NMR-based modification of matrix metalloproteinase inhibitors with improved bioavailability.
J Med Chem. 2002 Dec 19;45(26):5628-39
Authors: Hajduk PJ, Shuker SB, Nettesheim DG, Craig R, Augeri DJ, Betebenner D, Albert DH, Guo Y, Meadows RP, Xu L, Michaelides M, Davidsen SK, Fesik SW
The NMR-based discovery of biaryl hydroxamate inhibitors of the matrix metalloproteinase stromelysin (MMP-3) has been previously described (Hajduk et al....
nmrlearner
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11-24-2010 08:58 PM
[BMNRC community] MatGAT (Matrix Global Alignment Tool)
MatGAT (Matrix Global Alignment Tool)
MatGAT (Matrix Global Alignment Tool) is a simple, easy to use similarity/identity matrix generator
http://bitincka.com/ledion/matgat/
Go to BMNRC community to find more info about this topic.
nmrlearner
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09-09-2010 12:29 PM
NMR Technician at Matrix Information Consulting (La Jolla, CA)
NMR Technician at Matrix Information Consulting (La Jolla, CA)
is for a skilled NMR (Nuclear Magnetic Resonance) scientist to help with site NMR moves. Candidate must have ... experience) in small molecule structure elucidation using NMR/Mass Spectroscopy Expertise with Bruker Varian NMR...
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08-29-2010 08:46 PM
[NMR paper] Comparison of the NMR and X-ray structures of the HIV-1 matrix protein: evidence for
Comparison of the NMR and X-ray structures of the HIV-1 matrix protein: evidence for conformational changes during viral assembly.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Comparison of the NMR and X-ray structures of the HIV-1 matrix protein: evidence for conformational changes during viral assembly.
Protein Sci. 1996...
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08-22-2010 02:20 PM
[NMR paper] Complete relaxation matrix refinement of NMR structures of proteins using analyticall
Complete relaxation matrix refinement of NMR structures of proteins using analytically calculated dihedral angle derivatives of NOE intensities.
Related Articles Complete relaxation matrix refinement of NMR structures of proteins using analytically calculated dihedral angle derivatives of NOE intensities.
J Biomol NMR. 1991 Sep;1(3):257-69
Authors: Mertz JE, Güntert P, Wüthrich K, Braun W
A new method for refining three-dimensional (3D) NMR structures of proteins is described, which takes account of the complete relaxation pathways....
nmrlearner
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08-21-2010 11:12 PM
[NMR paper] Complete relaxation matrix refinement of NMR structures of proteins using analyticall
Complete relaxation matrix refinement of NMR structures of proteins using analytically calculated dihedral angle derivatives of NOE intensities.
Related Articles Complete relaxation matrix refinement of NMR structures of proteins using analytically calculated dihedral angle derivatives of NOE intensities.
J Biomol NMR. 1991 Sep;1(3):257-69
Authors: Mertz JE, Güntert P, Wüthrich K, Braun W
A new method for refining three-dimensional (3D) NMR structures of proteins is described, which takes account of the complete relaxation pathways....