The article â??Joint X-ray/NMR structure refinement of multidomain/multisubunit systemsâ?? written by â??Azzurra Carlon, Enrico Ravera, Giacomo Parigi, Garib N. Murshudov and Claudio Luchinatâ?? was originally published electronically on the publisherâ??s internet portal (currently SpringerLink) on 11 October 2018 without open access.
Joint X-ray/NMR structure refinement of multidomain/multisubunit systems
Joint X-ray/NMR structure refinement of multidomain/multisubunit systems
Abstract
Data integration in structural biology has become a paradigm for the characterization of biomolecular systems, and it is now accepted that combining different techniques can fill the gaps in each otherâ??s blind spots. In this frame, one of the combinations, which we have implemented in REFMAC-NMR, is residual dipolar couplings from NMR together with experimental data from X-ray diffraction. The first are exquisitely sensitive to the local details but does not give any...
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11-25-2018 06:02 AM
ImprovedAccuracy from Joint X-ray and NMRRefinement of a Protein–RNA Complex Structure
ImprovedAccuracy from Joint X-ray and NMRRefinement of a Protein–RNA Complex Structure
Azzurra Carlon, Enrico Ravera, Janosch Hennig, Giacomo Parigi, Michael Sattler and Claudio Luchinat
http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.5b11598/20160129/images/medium/ja-2015-11598y_0009.gif
Journal of the American Chemical Society
DOI: 10.1021/jacs.5b11598
http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA
http://feeds.feedburner.com/~r/acs/jacsat/~4/4w5mwIM6SB8
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01-30-2016 07:56 AM
[NMR paper] Improved accuracy from joint X-ray and NMR refinement of a protein-RNA complex structure.
Improved accuracy from joint X-ray and NMR refinement of a protein-RNA complex structure.
Improved accuracy from joint X-ray and NMR refinement of a protein-RNA complex structure.
J Am Chem Soc. 2016 Jan 13;
Authors: Carlon A, Ravera E, Hennig J, Parigi G, Sattler M, Luchinat C
Abstract
Integrated experimental approaches play an increasingly important role in structural biology, taking advantage of the complementary information provided by different techniques. In particular, the combination of NMR data with X-ray diffraction...
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01-14-2016 11:53 PM
[NMR paper] Simultaneous use of solution NMR and X-ray data in REFMAC5 for joint refinement/detection of structural differences.
Simultaneous use of solution NMR and X-ray data in REFMAC5 for joint refinement/detection of structural differences.
Simultaneous use of solution NMR and X-ray data in REFMAC5 for joint refinement/detection of structural differences.
Acta Crystallogr D Biol Crystallogr. 2014 Apr 1;70(Pt 4):958-67
Authors: Rinaldelli M, Ravera E, Calderone V, Parigi G, Murshudov GN, Luchinat C
Abstract
The program REFMAC5 from CCP4 was modified to allow the simultaneous use of X-ray crystallographic data and paramagnetic NMR data (pseudocontact...
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04-06-2014 02:01 AM
Correction for Li et al., Mechanism of E-cadherin dimerization probed by NMR relaxation dispersion [Correction]
Correction for Li et al., Mechanism of E-cadherin dimerization probed by NMR relaxation dispersion
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Date: 2013-11-26
BIOPHYSICS AND COMPUTATIONAL BIOLOGY Correction for “Mechanism of E-cadherin dimerization probed by NMR relaxation dispersion,” by Ying Li, Nicole L. Altorelli, Fabiana Bahna, Barry Honig, Lawrence Shapiro, and Arthur G. Palmer III, which appeared in issue 41, October 8, 2013, of Proc Natl Acad Sci USA (110:16462–16467; first published September... Read More
PNAS:
Number: 48
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11-27-2013 01:50 AM
Sequence correction of random coil chemical shifts: correlation between neighbor correction factors and changes in the Ramachandran distribution
Sequence correction of random coil chemical shifts: correlation between neighbor correction factors and changes in the Ramachandran distribution
Abstract Random coil chemical shifts are necessary for secondary chemical shift analysis, which is the main NMR method for identification of secondary structure in proteins. One of the largest challenges in the determination of random coil chemical shifts is accounting for the effect of neighboring residues. The contributions from the neighboring residues are typically removed by using neighbor correction factors determined based on each...
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06-06-2011 12:53 AM
[NMR paper] Joint X-ray and NMR refinement of the yeast L30e-mRNA complex.
Joint X-ray and NMR refinement of the yeast L30e-mRNA complex.
Related Articles Joint X-ray and NMR refinement of the yeast L30e-mRNA complex.
Structure. 2004 Jul;12(7):1165-76
Authors: Chao JA, Williamson JR
L30e, a Saccharomyces cervisiae ribosomal protein, regulates its own expression by binding to a purine-rich asymmetric internal loop located in both its pre-mRNA and mature mRNA. A crystal structure of an MBP-L30e fusion protein in complex with an RNA containing the pre-mRNA regulatory site was solved at 3.24 A. Interestingly, the...
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11-24-2010 09:51 PM
[NMR paper] Joint refinement as a tool for thorough comparison between NMR and X-ray data and str
Joint refinement as a tool for thorough comparison between NMR and X-ray data and structures of HU protein.
Related Articles Joint refinement as a tool for thorough comparison between NMR and X-ray data and structures of HU protein.
J Biomol NMR. 2001 Nov;21(3):235-48
Authors: Raves ML, Doreleijer JF, Vis H, Vorgias CE, Wilson KS, Kaptei R
Joint refinement, i.e., the simultaneous refinement of a structure against both nuclear magnetic resonance (NMR) spectroscopic and X-ray crystallographic data, was performed on the HU protein from Bacillus...
Correction to: Joint X-ray/NMR structure refinement of multidomain/multisubunit systems
Linear Mode
