NMR paper Controlled Protein-Membrane Interactions Modulate Self-Organization of Min Protein Patterns

		BioNMR > Educational resources > Journal club
[NMR paper] Controlled Protein-Membrane Interactions Modulate Self-Organization of Min Protein Patterns

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

10-07-2024, 08:49 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Controlled Protein-Membrane Interactions Modulate Self-Organization of Min Protein Patterns

Controlled Protein-Membrane Interactions Modulate Self-Organization of Min Protein Patterns

Angewandte Chemie International Edition, Volume 63, Issue 42, October 14, 2024.

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR - Nature.com Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR - Nature.com Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR Nature.com Read here	nmrlearner	Online News	0	03-24-2024 06:32 AM
[NMR paper] Dimer organization of membrane-associated NS5A of hepatitis C virus as determined by highly sensitive1H-detected solid-state NMR. Dimer organization of membrane-associated NS5A of hepatitis C virus as determined by highly sensitive1H-detected solid-state NMR. Related Articles Dimer organization of membrane-associated NS5A of hepatitis C virus as determined by highly sensitive*1H-detected solid-state NMR. Angew Chem Int Ed Engl. 2020 Nov 18;: Authors: Jirasko V, Lends A, Lakomek NA, Fogeron ML, Weber M, Malär A, Penzel S, Bartenschlager R, Meier BH, Böckmann A Abstract The Hepatitis C virus nonstructural protein 5A (NS5A) is a membrane-associated protein...	nmrlearner	Journal club	0	11-20-2020 09:24 AM
Real-Time In-Cell Nuclear Magnetic Resonance: Ribosome-TargetedAntibiotics Modulate Quinary Protein Interactions Real-Time In-Cell Nuclear Magnetic Resonance: Ribosome-TargetedAntibiotics Modulate Quinary Protein Interactions http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00938/20180108/images/medium/bi-2017-00938t_0004.gif Biochemistry DOI: 10.1021/acs.biochem.7b00938 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/ylGRHlv1kYM More...	nmrlearner	Journal club	0	01-09-2018 09:41 AM
[NMR paper] Real Time In-cell NMR: Ribosome Targeted Antibiotics Modulate Quinary Protein Interactions. Real Time In-cell NMR: Ribosome Targeted Antibiotics Modulate Quinary Protein Interactions. Real Time In-cell NMR: Ribosome Targeted Antibiotics Modulate Quinary Protein Interactions. Biochemistry. 2017 Dec 21;: Authors: Breindel LM, DeMott CM, Burz DS, Shekhtman A Abstract It is not well understood how ribosome antibiotics affect a wide range of biochemical pathways; changes in RNA-mediated protein quinary interactions and consequent activity inside the crowded cytosol may provide one possible mechanism. We developed real-time...	nmrlearner	Journal club	0	12-22-2017 07:55 PM
[NMR paper] Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR. Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR. Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR. Nat Protoc. 2018 Jan;13(1):79-98 Authors: Hagn F, Nasr ML, Wagner G Abstract Suitable membrane mimetics are crucial to the performance of structural and functional studies of membrane proteins. Phospholipid nanodiscs (formed when a membrane scaffold protein encircles a small portion of a lipid bilayer) have...	nmrlearner	Journal club	0	12-08-2017 02:25 PM
Ribosome Mediated Quinary Interactions Modulate In-CellProtein Activities Ribosome Mediated Quinary Interactions Modulate In-CellProtein Activities http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00613/20170803/images/medium/bi-2017-00613g_0006.gif Biochemistry DOI: 10.1021/acs.biochem.7b00613 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/0wWEswasj7s More...	nmrlearner	Journal club	0	08-04-2017 03:16 AM
[NMR paper] Fluoroacetamide Moieties as NMR Probes for molecular recognition of GlcNAc-containing sugars: Modulation of the CH-? Stacking Interactions by Different Fluorination Patterns. Fluoroacetamide Moieties as NMR Probes for molecular recognition of GlcNAc-containing sugars: Modulation of the CH-? Stacking Interactions by Different Fluorination Patterns. Fluoroacetamide Moieties as NMR Probes for molecular recognition of GlcNAc-containing sugars: Modulation of the CH-? Stacking Interactions by Different Fluorination Patterns. Chemistry. 2017 Jan 26;: Authors: Unione L, Alcalá M, Echeverria B, Serna S, Ardá A, Franconetti A, Cañada J, Diercks T, Reichardt N, Jimenez-Barbero J Abstract We herein propose the...	nmrlearner	Journal club	0	01-27-2017 12:04 PM
Drugs Modulate Interactions between the First Nucleotide-BindingDomain and the Fourth Cytoplasmic Loop of Human P-Glycoprotein Drugs Modulate Interactions between the First Nucleotide-BindingDomain and the Fourth Cytoplasmic Loop of Human P-Glycoprotein http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00233/20160511/images/medium/bi-2016-00233f_0003.gif Biochemistry DOI: 10.1021/acs.biochem.6b00233 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/_vbgkPO_-Zg More...	nmrlearner	Journal club	0	05-11-2016 08:04 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off