Conformational States of ADP Ribosylation Factor 1 Complexed with Different Guanosine Triphosphates As Studied by 31P NMR Spectroscopy

		BioNMR > Educational resources > Journal club
Conformational States of ADP Ribosylation Factor 1 Complexed with Different Guanosine Triphosphates As Studied by 31P NMR Spectroscopy

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

07-06-2011, 06:14 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Conformational States of ADP Ribosylation Factor 1 Complexed with Different Guanosine Triphosphates As Studied by 31P NMR Spectroscopy

Conformational States of ADP Ribosylation Factor 1 Complexed with Different Guanosine Triphosphates As Studied by 31P NMR Spectroscopy

Biochemistry
DOI: 10.1021/bi101573j

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Identifying Guanosine Self Assembly at Natural Isotopic Abundance by High-Resolution 1H and 13C Solid-State NMR Spectroscopy Identifying Guanosine Self Assembly at Natural Isotopic Abundance by High-Resolution 1H and 13C Solid-State NMR Spectroscopy Amy L. Webber, Stefano Masiero, Silvia Pieraccini, Jonathan C. Burley, Andrew S. Tatton, Dinu Iuga, Tran N. Pham, Gian Piero Spada and Steven P. Brown http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja206516u/aop/images/medium/ja-2011-06516u_0007.gif Journal of the American Chemical Society DOI: 10.1021/ja206516u http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA...	nmrlearner	Journal club	0	11-18-2011 04:35 AM
Conformational Study of 9-Dehydro-9-Trifluoromethyl Cinchona Alkaloids via 19F NMR Spectroscopy: Emergence of Trifluoromethyl Moiety as a Conformational Stabilizer and a Probe Conformational Study of 9-Dehydro-9-Trifluoromethyl Cinchona Alkaloids via 19F NMR Spectroscopy: Emergence of Trifluoromethyl Moiety as a Conformational Stabilizer and a Probe G. K. Surya Prakash, Fang Wang, Chuanfa Ni, Jingguo Shen, Ralf Haiges, Andrei K. Yudin, Thomas Mathew and George A. Olah http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja202373d/aop/images/medium/ja-2011-02373d_0006.gif Journal of the American Chemical Society DOI: 10.1021/ja202373d http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA...	nmrlearner	Journal club	0	06-14-2011 02:30 AM
[NMR tweet] Homogeneous coexistence of SDW and SC states in CaFe(1-x)Co(x)AsF studied by nuclear magnetic resonance. http://arxiv.org/abs/1012.1432 Homogeneous coexistence of SDW and SC states in CaFe(1-x)Co(x)AsF studied by nuclear magnetic resonance. http://arxiv.org/abs/1012.1432 Published by CondMatPapers (Condensed Matter) on 2010-12-08T02:12:42Z Source: Twitter	nmrlearner	Twitter NMR	0	12-08-2010 02:26 AM
[NMR paper] Ribonuclease Sa conformational stability studied by NMR-monitored hydrogen exchange. Ribonuclease Sa conformational stability studied by NMR-monitored hydrogen exchange. Related Articles Ribonuclease Sa conformational stability studied by NMR-monitored hydrogen exchange. Biochemistry. 2005 May 31;44(21):7644-55 Authors: Laurents DV, Scholtz JM, Rico M, Pace CN, Bruix M The conformational stability of ribonuclease Sa (RNase Sa) has been measured at the per-residue level by NMR-monitored hydrogen exchange at pH* 5.5 and 30 degrees C. In these conditions, the exchange mechanism was found to be EXII. The conformational stability...	nmrlearner	Journal club	0	11-25-2010 08:21 PM
[NMR paper] Microsecond timescale backbone conformational dynamics in ubiquitin studied with NMR Microsecond timescale backbone conformational dynamics in ubiquitin studied with NMR R1rho relaxation experiments. Related Articles Microsecond timescale backbone conformational dynamics in ubiquitin studied with NMR R1rho relaxation experiments. Protein Sci. 2005 Mar;14(3):735-42 Authors: Massi F, Grey MJ, Palmer AG NMR spin relaxation experiments are used to characterize the dynamics of the backbone of ubiquitin. Chemical exchange processes affecting residues Ile 23, Asn 25, Thr 55, and Val 70 are characterized using on- and off-resonance...	nmrlearner	Journal club	0	11-24-2010 11:14 PM
[NMR paper] Conformational differences between complexes of elongation factor Tu studied 19F-NMR Conformational differences between complexes of elongation factor Tu studied 19F-NMR spectroscopy. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif Related Articles Conformational differences between complexes of elongation factor Tu studied 19F-NMR spectroscopy. Eur J Biochem. 1993 Dec 15;218(3):1041-7 Authors: Eccleston JF, Molloy DP, Hinds MG, King RW, Feeney J An analogue of elongation factor Tu (EF-Tu) from Escherichia coli was prepared by...	nmrlearner	Journal club	0	08-22-2010 03:01 AM
[NMR paper] Structure-function relationships in human epidermal growth factor studied by site-dir Structure-function relationships in human epidermal growth factor studied by site-directed mutagenesis and 1H NMR. Related Articles Structure-function relationships in human epidermal growth factor studied by site-directed mutagenesis and 1H NMR. Biochemistry. 1991 Sep 10;30(36):8891-8 Authors: Hommel U, Dudgeon TJ, Fallon A, Edwards RM, Campbell ID In order to elucidate the mechanism of interaction between human epidermal growth factor (EGF) and its receptor, selected variants of EGF, differing by single amino acid substitutions, have been...	nmrlearner	Journal club	0	08-21-2010 11:12 PM
[NMR paper] Structure-function relationships in human epidermal growth factor studied by site-dir Structure-function relationships in human epidermal growth factor studied by site-directed mutagenesis and 1H NMR. Related Articles Structure-function relationships in human epidermal growth factor studied by site-directed mutagenesis and 1H NMR. Biochemistry. 1991 Sep 10;30(36):8891-8 Authors: Hommel U, Dudgeon TJ, Fallon A, Edwards RM, Campbell ID In order to elucidate the mechanism of interaction between human epidermal growth factor (EGF) and its receptor, selected variants of EGF, differing by single amino acid substitutions, have been...	nmrlearner	Journal club	0	08-21-2010 11:12 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off