Compressed sensing and the reconstruction of ultrafast 2D NMR data: Principles and biomolecular applications.
 

Compressed sensing and the reconstruction of ultrafast 2D NMR data: Principles and biomolecular applications.

Compressed sensing and the reconstruction of ultrafast 2D NMR data: Principles and biomolecular applications.

J Magn Reson. 2011 Apr;209(2):352-8

Authors: Shrot Y, Frydman L

A topic of active investigation in 2D NMR relates to the minimum number of scans required for acquiring this kind of spectra, particularly when these are dictated by sampling rather than by sensitivity considerations. Reductions in this minimum number of scans have been achieved by departing from the regular sampling used to monitor the indirect domain, and relying instead on non-uniform sampling and iterative reconstruction algorithms. Alternatively, so-called "ultrafast" methods can compress the minimum number of scans involved in 2D NMR all the way to a minimum number of one, by spatially encoding the indirect domain information and subsequently recovering it via oscillating field gradients. Given ultrafast NMR's simultaneous recording of the indirect- and direct-domain data, this experiment couples the spectral constraints of these orthogonal domains - often calling for the use of strong acquisition gradients and large filter widths to fulfill the desired bandwidth and resolution demands along all spectral dimensions. This study discusses a way to alleviate these demands, and thereby enhance the method's performance and applicability, by combining spatial encoding with iterative reconstruction approaches. Examples of these new principles are given based on the compressed-sensed reconstruction of biomolecular 2D HSQC ultrafast NMR data, an approach that we show enables a decrease of the gradient strengths demanded in this type of experiments by up to 80%.

PMID: 21316276 [PubMed - indexed for MEDLINE]



Source: PubMed