NMR paper Complete NMR assignment of cyclic octapeptide CTAP.

		BioNMR > Educational resources > Journal club
[NMR paper] Complete NMR assignment of cyclic octapeptide CTAP.

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-13-2015, 12:28 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Complete NMR assignment of cyclic octapeptide CTAP.

Related Articles Complete NMR assignment of cyclic octapeptide CTAP.

Magn Reson Chem. 2014 Aug;52(8):467-9

Authors: Gao Y, Huo Y, Wang Z, Liu Y, Zhang H

PMID: 24911419 [PubMed - indexed for MEDLINE]

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] Reconsidering complete search algorithms for protein backbone NMR assignment. Reconsidering complete search algorithms for protein backbone NMR assignment. Related Articles Reconsidering complete search algorithms for protein backbone NMR assignment. Bioinformatics. 2005 Sep 1;21 Suppl 2:ii230-6 Authors: Vitek O, Bailey-Kellogg C, Craig B, Kuliniewicz P, Vitek J MOTIVATION: Nuclear magnetic resonance (NMR) spectroscopy is widely used to determine and analyze protein structures. An essential step in NMR studies is determining the backbone resonance assignment, which maps individual atoms to experimentally measured...	nmrlearner	Journal club	0	12-01-2010 06:56 PM
[NMR paper] Complete assignment of heteronuclear protein resonances by protonless NMR spectroscop Complete assignment of heteronuclear protein resonances by protonless NMR spectroscopy. Related Articles Complete assignment of heteronuclear protein resonances by protonless NMR spectroscopy. Angew Chem Int Ed Engl. 2005 May 13;44(20):3089-92 Authors: Bermel W, Bertini I, Duma L, Felli IC, Emsley L, Pierattelli R, Vasos PR	nmrlearner	Journal club	0	11-25-2010 08:21 PM
Strategy for complete NMR assignment of disordered proteins with highly repetitive se Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experiments Abstract A strategy for complete backbone and side-chain resonance assignment of disordered proteins with highly repetitive sequence is presented. The protocol is based on three resolution-enhanced NMR experiments: 5D HN(CA)CONH provides sequential connectivity, 5D HabCabCONH is utilized to identify amino acid types, and 5D HC(CC-TOCSY)CONH is used to assign the side-chain resonances. The improved resolution was achieved by a combination of high...	nmrlearner	Journal club	0	10-06-2010 02:16 AM
Strategy for complete NMR assignment of disordered proteins with highly repetitive se Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experiments. Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experiments. J Biomol NMR. 2010 Oct 2; Authors: MotÃ¡Ä?kovÃ¡ V, NovÃ¡Ä?ek J, Zawadzka-Kazimierczuk A, Kazimierczuk K, ZÃ*dek L, SanderovÃ¡ H, KrÃ¡snÃ½ L, KoÅºmiÅ?ski W, SklenÃ¡Å? V A strategy for complete backbone and side-chain resonance assignment of disordered proteins with highly...	nmrlearner	Journal club	0	10-05-2010 12:11 PM
[NMR paper] Complete sequence-specific 1H NMR resonance assignment of hyperfine-shifted residues Complete sequence-specific 1H NMR resonance assignment of hyperfine-shifted residues in the active site of a paramagnetic protein: application to Aplysia cyano-metmyoglobin. Related Articles Complete sequence-specific 1H NMR resonance assignment of hyperfine-shifted residues in the active site of a paramagnetic protein: application to Aplysia cyano-metmyoglobin. J Biomol NMR. 1992 Nov;2(6):597-618 Authors: Qin J, La Mar GN Two-dimensional sequence-specific 1H NMR resonance assignment methodology (WÃ¼thrich, 1986) has been applied for the first...	nmrlearner	Journal club	0	08-21-2010 11:45 PM
[NMR paper] Complete 1H and 13C assignment of Lys and Leu sidechains of staphylococcal nuclease u Complete 1H and 13C assignment of Lys and Leu sidechains of staphylococcal nuclease using HCCH-COSY and HCCH-TOCSY 3D NMR spectroscopy. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Complete 1H and 13C assignment of Lys and Leu sidechains of staphylococcal nuclease using HCCH-COSY and HCCH-TOCSY 3D NMR spectroscopy. FEBS Lett. 1991 Apr 9;281(1-2):33-8 Authors: Baldisseri DM, Pelton JG, Sparks SW, Torchia DA Complete proton and carbon sidechain assignments are...	nmrlearner	Journal club	0	08-21-2010 11:16 PM
[NMR paper] Complete assignment of the 1H NMR spectrum and secondary structure of the DNA binding Complete assignment of the 1H NMR spectrum and secondary structure of the DNA binding domain of GAL4. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Complete assignment of the 1H NMR spectrum and secondary structure of the DNA binding domain of GAL4. FEBS Lett. 1990 Dec 10;276(1-2):49-53 Authors: Gadhavi PL, Raine AR, Alefounder PR, Laue ED Complete 1H NMR resonance assignments are presented for the cysteine rich region of the DNA binding domain of the yeast...	nmrlearner	Journal club	0	08-21-2010 11:04 PM
[NMR paper] Complete resonance assignment for the polypeptide backbone of interleukin 1 beta usin Complete resonance assignment for the polypeptide backbone of interleukin 1 beta using three-dimensional heteronuclear NMR spectroscopy. Related Articles Complete resonance assignment for the polypeptide backbone of interleukin 1 beta using three-dimensional heteronuclear NMR spectroscopy. Biochemistry. 1990 Apr 10;29(14):3542-56 Authors: Driscoll PC, Clore GM, Marion D, Wingfield PT, Gronenborn AM The complete sequence-specific assignment of the 15N and 1H backbone resonances of the NMR spectrum of recombinant human interleukin 1 beta (153...	nmrlearner	Journal club	0	08-21-2010 10:48 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off