BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 07-11-2020, 03:34 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default On the complementarity of X-ray and NMR data.

On the complementarity of X-ray and NMR data.

Related Articles On the complementarity of X-ray and NMR data.

J Struct Biol X. 2020;4:100019

Authors: Schirò A, Carlon A, Parigi G, Murshudov G, Calderone V, Ravera E, Luchinat C

Abstract
X-ray crystallography and NMR contain complementary information for the structural characterization of biological macromolecules. X-ray diffraction is primarily sensitive to the overall shape of the molecule, whereas NMR is mostly sensitive to the atomic detail. Their combination can therefore provide a stronger justification for the resulting structure. For their combination we have recently proposed REFMAC-NMR, which relies on primary data from both techniques for joint refinement. This possibility raises the compelling question of how far the complementarity can be extended. In this paper, we describe an integrative approach to the refinement with NMR data of four X-ray structures of hen-egg-white lysozyme, solved at atomic resolution in four different crystal forms, and we demonstrate that the outcome critically depends on the crystal form itself, reflecting the sensitivity of NMR to fine details.


PMID: 32647823 [PubMed]



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] Complementarity and congruence between exact NOEs and traditional NMR probes for spatial decoding of protein dynamics.
Complementarity and congruence between exact NOEs and traditional NMR probes for spatial decoding of protein dynamics. Related Articles Complementarity and congruence between exact NOEs and traditional NMR probes for spatial decoding of protein dynamics. J Struct Biol. 2015 Jul 20; Authors: Vögeli B, Olsson S, Riek R, Güntert P Abstract The study of the spatial sampling of biomolecules is essential to understanding the structure-dynamics-function relationship. We have established a protocol for the determination of...
nmrlearner Journal club 0 07-25-2015 01:54 PM
Complementarity and congruence between exact NOEs and traditional NMR probes for spatial decoding of protein dynamics
Complementarity and congruence between exact NOEs and traditional NMR probes for spatial decoding of protein dynamics Publication date: Available online 20 July 2015 Source:Journal of Structural Biology</br> Author(s): Beat Vögeli, Simon Olsson, Roland Riek, Peter Güntert</br> The study of the spatial sampling of biomolecules is essential to understanding the structure-dynamics-function relationship. We have established a protocol for the determination of multiple-state ensembles based on exact measurements of the nuclear Overhauser effect (eNOE). The...
nmrlearner Journal club 0 07-20-2015 09:54 PM
[NMR tweet] NMR Data-Acquisition Software: Agilent introduced the latest version of its data-acquisition software for nuclear magnetic resonance ...
NMR Data-Acquisition Software: Agilent introduced the latest version of its data-acquisition software for nuclear magnetic resonance ... Published by davidp98 (David P.) on 2013-04-16T05:52:41Z Source: Twitter
nmrlearner Twitter NMR 0 04-16-2013 06:22 AM
An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database
An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database Abstract Biomolecular NMR chemical shift data are key information for the functional analysis of biomolecules and the development of new techniques for NMR studies utilizing chemical shift statistical information. Structural genomics projects are major contributors to the accumulation of protein chemical shift information. The management of the large...
nmrlearner Journal club 0 06-16-2012 06:01 AM
[NMR tweet] Landolt-Bornstein: Nuclear Magnetic Resonance Data (Numerical Data and Functional Relationships in Science and ... http://amzn.to/kqQOoy
Landolt-Bornstein: Nuclear Magnetic Resonance Data (Numerical Data and Functional Relationships in Science and ... http://amzn.to/kqQOoy Published by Gemaclam (Gema Novick) on 2011-05-22T09:41:56Z Source: Twitter
nmrlearner Twitter NMR 0 05-22-2011 10:41 AM
[NMR tweet] Landolt-Bornstein: Nuclear Magnetic Resonance Data (Numerical Data and Functional Relationships in Science and ... http://amzn.to/kqQOoy
Landolt-Bornstein: Nuclear Magnetic Resonance Data (Numerical Data and Functional Relationships in Science and ... http://amzn.to/kqQOoy Published by Jackelyndex (Jackelyn Keisler) on 2011-05-18T07:57:00Z Source: Twitter
nmrlearner Twitter NMR 0 05-18-2011 08:00 AM
[NMRwiki tweet] nmrwiki: How to solve VNMRJ "No data in data file" problem? #nmr @Agilenthttp://qa.nmrwiki.org/question/220/vnmrj-no-data-in-data-file
nmrwiki: How to solve VNMRJ "No data in data file" problem? #nmr @Agilenthttp://qa.nmrwiki.org/question/220/vnmrj-no-data-in-data-file nmrwiki: How to solve VNMRJ "No data in data file" problem? #nmr @Agilenthttp://qa.nmrwiki.org/question/220/vnmrj-no-data-in-data-file Source: NMRWiki tweets
nmrlearner Twitter NMR 0 01-18-2011 02:44 AM
[NMR analysis blog] Mnova 6.0, at last! GSD, Line Fitting, Data Analysis, handling of LC/GC/MS data and m
Mnova 6.0, at last! GSD, Line Fitting, Data Analysis, handling of LC/GC/MS data and much more! It's been over 6 weeks since my last post on this blog but don’t worry, I haven’t been idle. On the contrary, I have a very good excuse for this lack of posts: We all at Mestrelab have been working very hard trying to get version 6.0 of Mnova finished. Now I’m delighted to announce that we have done it and version 6.0 is finally available for download from our Web site. This is certainly a major upgrade of the software in which we have put a lot of work and passion. It brings a number of...
nmrlearner News from NMR blogs 0 08-21-2010 09:12 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 10:10 PM.


Map