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NMR processing:
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UNIO Match
PINE
Side-chains:
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UNIO Candid
ASDP
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Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
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Fragment-based:
BMRB CS-Rosetta
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Template-based:
GeNMR
I-TASSER
Refinement:
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Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
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Torsion angles from chemical shifts:
Preditor
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Secondary structure from chemical shifts:
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MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
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Chemical shifts re-referencing:
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SAVES2 or SAVES4
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Verify_3D
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V-NMR
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Methyl S2
B-factor
Molecular dynamics:
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Chemical shifts prediction:
From structure:
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Sparta+
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CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
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Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
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Isotope labeling:
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Solid-state NMR:
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Old 12-28-2015, 12:26 AM
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Default The casein kinase 2-dependent phosphorylation of NS5A domain 3 from hepatitis C virus followed by time-resolved NMR.

The casein kinase 2-dependent phosphorylation of NS5A domain 3 from hepatitis C virus followed by time-resolved NMR.

Related Articles The casein kinase 2-dependent phosphorylation of NS5A domain 3 from hepatitis C virus followed by time-resolved NMR.

Chembiochem. 2015 Dec 18;

Authors: Secci E, Luchinat E, Banci L

Abstract
Hepatitis C virus (HCV) chronically affects millions of individuals worldwide. The HCV non-structural protein 5A (NS5A) plays a critical role in the viral assembly pathway. Domain 3 (D3) of NS5A is an unstructured polypeptide responsible for the interaction with the core particle assembly structure. Casein kinase 2 (CK2) phosphorylates NS5A-D3 at multiple sites, which have been largely predicted and only indirectly observed. In order to identify the CK2-dependent phosphorylation sites, we monitored in vitro the reaction between NS5A-D3 and CK2 by time-resolved NMR. We unambiguously identified four serine residues as substrates of CK2. The apparent rate constant was determined for each site from the reaction curves. Serine 408 was quickly phosphorylated, while three other serines reacted slower. These results provide a starting point to elucidate the role of phosphorylation in the mechanisms of viral assembly, and in the modulation of the viral activity, at the molecular level.


PMID: 26684216 [PubMed - as supplied by publisher]



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