Improving our understanding of nanosecond motions in disordered proteins requires the enhanced sampling of the spectral density function obtained from relaxation at low magnetic fields. High-resolution relaxometry and two-field NMR measurements of relaxation have, so far, only been based on the recording of one- or two-dimensional spectra, which provide insufficient resolution for challenging disordered proteins. Here, we introduce a 3D-HNCO-based two-field NMR experiment for measurements of protein backbone \(^{15}\hbox {N}\) amide longitudinal relaxation rates. The experiment provides accurate longitudinal relaxation rates at low field (0.33 T in our case) preserving the resolution and sensitivity typical for high-field NMR spectroscopy. Radiofrequency pulses applied on six different radiofrequency channels are used to manipulate the spin system at both fields. The experiment was demonstrated on the C-terminal domain of \(\delta\) subunit of RNA polymerase from Bacillus subtilis, a protein with highly repetitive amino-acid sequence and very low dispersion of backbone chemical shifts.
[NMR paper] Atomic resolution conformational dynamics of intrinsically disordered proteins from NMR spin relaxation.
Atomic resolution conformational dynamics of intrinsically disordered proteins from NMR spin relaxation.
Atomic resolution conformational dynamics of intrinsically disordered proteins from NMR spin relaxation.
Prog Nucl Magn Reson Spectrosc. 2017 Nov;102-103:43-60
Authors: Salvi N, Abyzov A, Blackledge M
Abstract
Nuclear magnetic resonance (NMR) spectroscopy is one of the most powerful experimental approaches for investigating the conformational behaviour of intrinsically disordered proteins (IDPs). IDPs represent a significant...
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11-22-2017 02:01 PM
[NMR paper] Triple resonance [Formula: see text] NMR relaxation experiments for studies of intrinsically disordered proteins.
Triple resonance NMR relaxation experiments for studies of intrinsically disordered proteins.
Related Articles Triple resonance NMR relaxation experiments for studies of intrinsically disordered proteins.
J Biomol NMR. 2017 Oct 25;:
Authors: Srb P, Nová?ek J, Kade?ávek P, Rabatinová A, Krásný L, Žídková J, Bobálová J, Sklená? V, Žídek L
Abstract
Description of protein dynamics is known to be essential in understanding their function. Studies based on a well established NMR relaxation methodology have been applied to a large...
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10-28-2017 08:03 AM
Triple resonance $$^{15}\hbox {N}$$ 15 N NMR relaxation experiments for studies of intrinsically disordered proteins
Triple resonance $$^{15}\hbox {N}$$ 15 N NMR relaxation experiments for studies of intrinsically disordered proteins
Abstract
Description of protein dynamics is known to be essential in understanding their function. Studies based on a well established \(^{15}\hbox {N}\) NMR relaxation methodology have been applied to a large number of systems....
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10-25-2017 10:14 PM
Atomic Resolution Conformational Dynamics of Intrinsically Disordered Proteins from NMR Spin Relaxation
Atomic Resolution Conformational Dynamics of Intrinsically Disordered Proteins from NMR Spin Relaxation
Publication date: Available online 10 July 2017
Source:Progress in Nuclear Magnetic Resonance Spectroscopy</br>
Author(s): Nicola Salvi, Anton Abyzov, Martin Blackledge</br>
Nuclear magnetic resonance (NMR) spectroscopy is one of the most powerful experimental approaches for investigating the conformational behavior of intrinsically disordered proteins (IDPs). IDPs represent a significant fraction of all proteomes, and, despite their importance for...
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07-11-2017 09:20 AM
Five and four dimensional experiments for robust backbone resonance assignment of large intrinsically disordered proteins: application to Tau3x protein
Five and four dimensional experiments for robust backbone resonance assignment of large intrinsically disordered proteins: application to Tau3x protein
Abstract
New experiments dedicated for large IDPs backbone resonance assignment are presented. The most distinctive feature of all described techniques is the employment of MOCCA-XY16 mixing sequences to obtain effective magnetization transfers between carbonyl carbon backbone nuclei. The proposed 4 and 5 dimensional experiments provide a high dispersion of obtained signals making them suitable for use...
[NMR paper] Longitudinal relaxation properties of (1)H(N) and (1)H(?) determined by direct-detected (13)C NMR experiments to study intrinsically disordered proteins (IDPs).
Longitudinal relaxation properties of (1)H(N) and (1)H(?) determined by direct-detected (13)C NMR experiments to study intrinsically disordered proteins (IDPs).
Longitudinal relaxation properties of (1)H(N) and (1)H(?) determined by direct-detected (13)C NMR experiments to study intrinsically disordered proteins (IDPs).
J Magn Reson. 2015 Feb 12;254:19-26
Authors: Hošek T, Gil-Caballero S, Pierattelli R, Brutscher B, Felli IC
Abstract
Intrinsically disordered proteins (IDPs) are functional proteins containing large...
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03-17-2015 05:12 PM
Longitudinal relaxation properties of 1HN and 1H? determined by direct-detected 13C NMR experiments to study intrinsically disordered proteins (IDPs)
Longitudinal relaxation properties of 1HN and 1H? determined by direct-detected 13C NMR experiments to study intrinsically disordered proteins (IDPs)
Publication date: Available online 12 February 2015
Source:Journal of Magnetic Resonance</br>
Author(s): Tomáš Hošek , Sergi Gil-Caballero , Roberta Pierattelli , Bernhard Brutscher , Isabella C. Felli</br>
Intrinsically disordered proteins (IDPs) are functional proteins containing large fragments characterized by high local mobility. Bioinformatic studies have suggested that a significant fraction (more than 30%)...