Bacillus subtilis deletion strains studied by 23Na NMR reveal that the antiporter-subunit MrpA and the complex I subunit NuoL are Na+-transporter proteins

		BioNMR > Educational resources > Journal club
Bacillus subtilis deletion strains studied by 23Na NMR reveal that the antiporter-subunit MrpA and the complex I subunit NuoL are Na+-transporter proteins

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-03-2013, 10:13 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Bacillus subtilis deletion strains studied by 23Na NMR reveal that the antiporter-subunit MrpA and the complex I subunit NuoL are Na+-transporter proteins

Bacillus subtilis deletion strains studied by 23Na NMR reveal that the antiporter-subunit MrpA and the complex I subunit NuoL are Na+-transporter proteins

October 2012
Publication year: 2012
Source:Biochimica et Biophysica Acta (BBA) - Bioenergetics, Volume 1817, Supplement

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] NMR assignment of new thioredoxin-like protein YkuV from Bacillus subtilis. NMR assignment of new thioredoxin-like protein YkuV from Bacillus subtilis. Related Articles NMR assignment of new thioredoxin-like protein YkuV from Bacillus subtilis. J Biomol NMR. 2005 Jul;32(3):258 Authors: Zhang X, Yu C, Xia B, Jin C	nmrlearner	Journal club	0	12-01-2010 06:56 PM
[NMR paper] Molecular recognition of aminoglycoside antibiotics by bacterial defence proteins: NMR study of the structural and conformational features of streptomycin inactivation by Bacillus subtilis aminoglycoside-6-adenyl transferase. Molecular recognition of aminoglycoside antibiotics by bacterial defence proteins: NMR study of the structural and conformational features of streptomycin inactivation by Bacillus subtilis aminoglycoside-6-adenyl transferase. Related Articles Molecular recognition of aminoglycoside antibiotics by bacterial defence proteins: NMR study of the structural and conformational features of streptomycin inactivation by Bacillus subtilis aminoglycoside-6-adenyl transferase. Chemistry. 2005 Aug 19;11(17):5102-13 Authors: Corzana F, Cuesta I, Bastida A, Hidalgo A,...	nmrlearner	Journal club	0	12-01-2010 06:56 PM
[NMR paper] NMR structure of a complex containing the TFIIF subunit RAP74 and the RNA polymerase NMR structure of a complex containing the TFIIF subunit RAP74 and the RNA polymerase II carboxyl-terminal domain phosphatase FCP1. Related Articles NMR structure of a complex containing the TFIIF subunit RAP74 and the RNA polymerase II carboxyl-terminal domain phosphatase FCP1. Proc Natl Acad Sci U S A. 2003 May 13;100(10):5688-93 Authors: Nguyen BD, Abbott KL, Potempa K, Kobor MS, Archambault J, Greenblatt J, Legault P, Omichinski JG FCP1 is the only identified phosphatase specific for the phosphorylated CTD of RNA polymerase II (RNAP II)....	nmrlearner	Journal club	0	11-24-2010 09:01 PM
[NMR paper] Crystallization of the Bacillus subtilis RTP-DNA complex prepared using NMR spectrosc Crystallization of the Bacillus subtilis RTP-DNA complex prepared using NMR spectroscopy. Related Articles Crystallization of the Bacillus subtilis RTP-DNA complex prepared using NMR spectroscopy. Acta Crystallogr D Biol Crystallogr. 2001 Mar;57(Pt 3):421-4 Authors: Vivian JP, Wilce JA, Hastings AF, Wilce MC The replication terminator protein (RTP)-DNA complex of Bacillus subtilis is responsible for the arrest of DNA replication at terminator sites in the B. subtilis chromosome. The crystallization and preliminary diffraction data analysis...	nmrlearner	Journal club	0	11-19-2010 08:32 PM
[NMR paper] Subunit-specific backbone NMR assignments of a 64 kDa trp repressor/DNA complex: a ro Subunit-specific backbone NMR assignments of a 64 kDa trp repressor/DNA complex: a role for N-terminal residues in tandem binding. Related Articles Subunit-specific backbone NMR assignments of a 64 kDa trp repressor/DNA complex: a role for N-terminal residues in tandem binding. J Biomol NMR. 1998 Apr;11(3):307-18 Authors: Shan X, Gardner KH, Muhandiram DR, Kay LE, Arrowsmith CH Deuterium decoupled, triple resonance NMR spectroscopy was used to analyze complexes of 2H, 15N, 13C labelled intact and (des2-7) trp repressor (delta 2-7 trpR) from E....	nmrlearner	Journal club	0	11-17-2010 11:06 PM
Probing the Folding Intermediate of Bacillus subtilis RNase P protein by NMR. Probing the Folding Intermediate of Bacillus subtilis RNase P protein by NMR. Related Articles Probing the Folding Intermediate of Bacillus subtilis RNase P protein by NMR. Biochemistry. 2010 Sep 15; Authors: Chang YC, Franch WR, Oas TG Protein folding intermediates are often imperative to overall folding processes and consequent biological functions. However, the low population and transient nature of the intermediate states often hinder the biochemical and biophysical characterization. Previous studies have demonstrated that Bacillus...	nmrlearner	Journal club	0	09-17-2010 04:14 PM
[NMR paper] A 1H-NMR study of the transcription factor 1 from Bacillus subtilis phage SPO1 by sel A 1H-NMR study of the transcription factor 1 from Bacillus subtilis phage SPO1 by selective 2H-labeling. Complete assignment and structural analysis of the aromatic resonances for a 22-kDa homodimer. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif Related Articles A 1H-NMR study of the transcription factor 1 from Bacillus subtilis phage SPO1 by selective 2H-labeling. Complete assignment and structural analysis of the aromatic resonances for a 22-kDa homodimer. Eur J...	nmrlearner	Journal club	0	08-21-2010 11:53 PM
[NMR paper] Solution structure of the phosphocarrier protein HPr from Bacillus subtilis by two-di Solution structure of the phosphocarrier protein HPr from Bacillus subtilis by two-dimensional NMR spectroscopy. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Solution structure of the phosphocarrier protein HPr from Bacillus subtilis by two-dimensional NMR spectroscopy. Protein Sci. 1992 Oct;1(10):1363-76 Authors: Wittekind...	nmrlearner	Journal club	0	08-21-2010 11:45 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off