BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 05-24-2017, 06:27 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,777
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Application of the Halogen Bond in Protein Systems

Application of the Halogen Bond in Protein Systems



Biochemistry
DOI: 10.1021/acs.biochem.7b00371



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Structure–Energy Relationships of Halogen Bonds in Proteins
Structure–Energy Relationships of Halogen Bonds in Proteins http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00022/20170407/images/medium/bi-2017-000223_0005.gif Biochemistry DOI: 10.1021/acs.biochem.7b00022 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/_lhMkMkq9Eg More...
nmrlearner Journal club 0 04-22-2017 10:30 PM
Asynchronous through-bond homonuclear isotropic mixing: application to carbonā??carbon transfer in perdeuterated proteins under MAS
Asynchronous through-bond homonuclear isotropic mixing: application to carbonā??carbon transfer in perdeuterated proteins under MAS Abstract Multiple-bond carbonā??carbon homonuclear mixing is a hurdle in extensively deuterated proteins and under fast MAS due to the absence of an effective proton dipolar-coupling network. Such conditions are now commonly employed in solid-state NMR spectroscopy. Here, we introduce an isotropic homonuclear 13Cā??13C through-bond mixing sequence, MOCCA, for the solid state. Even though applied under MAS, this scheme...
nmrlearner Journal club 0 08-29-2015 09:18 PM
[NMR paper] Heteronuclear Transverse and Longitudinal Relaxation in AX4 Spin Systems: Application to 15N Relaxations in 15NH4+
Heteronuclear Transverse and Longitudinal Relaxation in AX4 Spin Systems: Application to 15N Relaxations in 15NH4+ Publication date: Available online 28 June 2014 Source:Journal of Magnetic Resonance</br> Author(s): Nicolas D. Werbeck , D. Flemming Hansen</br> The equations that describe the time-evolution of transverse and longitudinal 15N magnetisations in tetrahedral ammonium ions, 15NH4 +, are derived from the Bloch-Wangsness-Redfield density operator relaxation theory. It is assumed that the relaxation of the spin-states is dominated by (1) the intra-molecular...
nmrlearner Journal club 0 06-29-2014 02:00 AM
[NMR paper] Proton-Detected Solid-State NMR Spectroscopy at Aliphatic Sites: Application to Crystalline Systems.
Proton-Detected Solid-State NMR Spectroscopy at Aliphatic Sites: Application to Crystalline Systems. Related Articles Proton-Detected Solid-State NMR Spectroscopy at Aliphatic Sites: Application to Crystalline Systems. Acc Chem Res. 2013 Jun 7; Authors: Asami S, Reif B Abstract When applied to biomolecules, solid-state NMR suffers from low sensitivity and resolution. The major obstacle to applying proton detection in the solid state is the proton dipolar network, and deuteration can help avoid this problem. In the past, researchers...
nmrlearner Journal club 0 06-12-2013 11:42 AM
[NMR900 blog] CSC 2013 symposium - "Halogen Bonding and other Non-Covalent Interactions"
CSC 2013 symposium - "Halogen Bonding and other Non-Covalent Interactions" David Bryce (Ottawa) and Mark Taylor (Toronto) are organizing a symposium on "Halogen Bonding and other Non-Covalent Interactions" to be held as part of the Canadian Chemistry Conference in Quebec City, May 26-30, 2013. International experts including Prof. Pierangelo Metrangolo (Milan, Italy), Prof. Giuseppe Resnati (Milan, Italy), Prof. P. Shing Ho (Colorado State, USA), and Prof. Duncan Bruce (York, UK) have already agreed to give oral presentations at the meeting. Although this is not an NMR-focussed symposium,...
nmrlearner News from NMR blogs 0 10-22-2012 09:07 PM
A 2D 13C-CEST experiment for studying slowly exchanging protein systems using methyl probes: an application to protein folding
A 2D 13C-CEST experiment for studying slowly exchanging protein systems using methyl probes: an application to protein folding Abstract A 2D 13C Chemical Exchange Saturation Transfer (CEST) experiment is presented for studying slowly exchanging protein systems using methyl groups as probes. The utility of the method is first established through studies of protein L, a small protein, for which chemical exchange on the millisecond time-scale is not observed. Subsequently the approach is applied to a folding exchange reaction of a G48M mutant Fyn SH3 domain, for which only cross-peaks...
nmrlearner Journal club 0 06-16-2012 06:01 AM
Improved accuracy in measuring one-bond and two-bond 15N,13CĪ± coupling constants in proteins by double-inphase/antiphase (DIPAP) spectroscopy
Improved accuracy in measuring one-bond and two-bond 15N,13CĪ± coupling constants in proteins by double-inphase/antiphase (DIPAP) spectroscopy Abstract An extension to HN(CO-Ī±/Ī²-N,CĪ±-J)-TROSY (Permi and Annila in J Biomol NMR 16:221ā??227, 2000) is proposed that permits the simultaneous determination of the four coupling constants 1 J Nā?²(i)CĪ±(i), 2 J HN(i)CĪ±(i), 2 J CĪ±(iā??1)Nā?²(i), and 3 J CĪ±(iā??1)HN(i) in 15N,13C-labeled proteins. Contrasting the original scheme, in which two separate subspectra exhibit the 2 J CĪ±Nā?² coupling as inphase and antiphase splitting (IPAP), we...
nmrlearner Journal club 0 06-10-2011 01:41 AM
Continuous-wave EPR at 275 GHz: Application to high-spin Fe3+ systems
Continuous-wave EPR at 275 GHz: Application to high-spin Fe3+ systems Publication year: 2011 Source: Journal of Magnetic Resonance, In Press, Accepted Manuscript, Available online 11 March 2011</br> G., Mathies , H., Blok , J.A.J.M., Disselhorst , P., Gast , H., van der Meer , ...</br> The 275 GHz electron-paramagnetic-resonance spectrometer we reported on in 2004 has been equipped with a new probe head, which contains a cavity especially designed for operation in continuous-wave mode. The sensitivity and signal stability that is achieved with this new probe head is illustrated...
nmrlearner Journal club 0 03-12-2011 05:21 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 03:47 PM.


Map