23 January 2013
Publication year: 2013 Source:Journal of Molecular Biology, Volume 425, Issue 2
Sulfur, a key contributor to biological reactivity, is not amendable to investigations by biological NMR spectroscopy. To utilize selenium as a surrogate, we have developed a generally applicable 77Se isotopic enrichment method for heterologous proteins expressed in Escherichia coli. We demonstrate 77Se NMR spectroscopy of multiple selenocysteine and selenomethionine residues in the sulfhydryl oxidase augmenter of liver regeneration (ALR). The resonances of the active-site residues were assigned by comparing the NMR spectra of ALR bound to oxidized and reduced flavin adenine dinucleotide. An additional resonance appears only in the presence of the reducing agent and disappears readily upon exposure to air and subsequent reoxidation of the flavin. Hence, 77Se NMR spectroscopy can be used to report the local electronic environment of reactive and structural sulfur sites, as well as changes taking place in those locations during catalysis. Graphical abstract
Highlights
? The NMR-active isotope 77Se is introduced into proteins by heterologous expression in E. coli. ? The method is cost effective and requires no synthesis or modifications to existing expression systems. ? The method permits control over the ratio of sulfur-to-selenium substitution in proteins allowing the manipulation of protein populations for medical and biochemical research. ? It is possible to resolve multiple selenomethionine and selenocysteine residues in the 32-kDa dimer of ALR by conventional NMR spectroscopy. ? Using the protein ALR, we further demonstrate the feasibility of routine biological Se NMR spectroscopy as a probe of structure and function.
Proteins Made To Order - The Biological SCENE
Proteins Made To Order - The Biological SCENE
http://www.bionmr.com//nt3.ggpht.com/news/tbn/F-bqGsEbXXBhFM/6.jpg
The Biological SCENE
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Proteins Made To Order
The Biological SCENE
Each red dot in the energy landscape is the lowest energy structure of the amino acid sequence of a designed protein as predicted by a Rosetta@home volunteer. The actual structure obtained with NMR (blue) closely matches the intended design structure ...
nmrlearner
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11-12-2012 05:43 PM
INTERTEK GROUP PLC : Intertek Expands cGMP Protein Structure Characterization ... - 4-traders
INTERTEK GROUP PLC : Intertek Expands cGMP Protein Structure Characterization ... - 4-traders
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INTERTEK GROUP PLC : Intertek Expands cGMP Protein Structure Characterization ...
4-traders
... biosimilars to explore the secondary and tertiary structure of proteins. In line with ICH Q6B guidelines, Intertek now offer a comprehensive set of higher order structure techniques, including CD, such as FTIR, NMR and Fluorescence spectroscopy.
Read here
nmrlearner
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05-30-2012 03:00 PM
Chemical shift tensor – The heart of NMR: Insights into biological aspects of proteins
Chemical shift tensor – The heart of NMR: Insights into biological aspects of proteins
Publication year: 2010
Source:Progress in Nuclear Magnetic Resonance Spectroscopy, Volume 57, Issue 2</br>
Hazime Saitô, Isao Ando, Ayyalusamy Ramamoorthy</br>
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nmrlearner
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03-09-2012 09:16 AM
[NMR paper] Capillary array electrophoretic NMR of proteins in biological buffer solutions.
Capillary array electrophoretic NMR of proteins in biological buffer solutions.
Related Articles Capillary array electrophoretic NMR of proteins in biological buffer solutions.
J Magn Reson. 1999 Dec;141(2):355-9
Authors: He Q, Liu Y, Sun H, Li E
The capillary array electrophoretic NMR (CA-ENMR) was developed to study protein mixtures in biological buffer solutions of high ionic strength. By enhancing the strength of the effective electric field across the sample, the technique permits the detection of the electrophoretic motion of 1 mM...
nmrlearner
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11-18-2010 08:31 PM
[NMR paper] 77Se NMR characterization of 77Se-labeled ovine erythrocyte glutathione peroxidase.
77Se NMR characterization of 77Se-labeled ovine erythrocyte glutathione peroxidase.
Related Articles 77Se NMR characterization of 77Se-labeled ovine erythrocyte glutathione peroxidase.
J Biol Chem. 1991 Mar 15;266(8):4804-9
Authors: Gettins P, Crews BC
Lambs, maintained on a selenium-deficient diet supplemented with 94 atom % Na2 27SeO3, have been used as a source of 77Se-enriched erythrocyte glutathione peroxidase. After 5 months on this diet, the percentage of selenium in the enzyme derived from the supplement had reached 88%. From each...
nmrlearner
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08-21-2010 11:16 PM
[NMR paper] NMR relaxation properties of 77Se-labeled proteins.
NMR relaxation properties of 77Se-labeled proteins.
Related Articles NMR relaxation properties of 77Se-labeled proteins.
J Biol Chem. 1991 Feb 25;266(6):3422-6
Authors: Gettins P, Wardlaw SA
A 77Se-containing moiety has been attached to cysteine residues in bovine hemoglobin, reduced ribonuclease A, and glutathione by reaction with 6,6'-diselenobis(3-nitrobenzoic acid). The resultant species contain Se-S linkages that have 77Se NMR absorptions in the range range of 568-580 ppm. Spectra have been recorded at 4.7 and 9.7 tesla (T). For labeled...
nmrlearner
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08-21-2010 11:16 PM
[NMR software blog] Installing the DOSY toolbox on a Mac
Installing the DOSY toolbox on a Mac
The DOSY toolbox is an open source program written by Dr. Mathias Nilsson that runs on Windows, Linux, Mac and on any other platform covered by MATLAB. I am going to review it next week, while today I am giving a few practical tips that I prefer to leave out of the review, for the sake of readability and tidiness.
I know that 14% of my readers have a Mac, and I have verified that the original installation instructions of the toolbox are inaccurate and unclear (for the average Mac user at least), so today I will simply explain how you can install the...
nmrlearner
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08-21-2010 06:29 PM
Enhanced production and isotope enrichment of recombinant glycoproteins produced in c
Abstract NMR studies of post-translationally modified proteins are complicated by the lack of an efficient method to produce isotope enriched recombinant proteins in cultured mammalian cells. We show that reducing the glucose concentration and substituting glutamate for glutamine in serum-free medium increased cell viability while simultaneously increasing recombinant protein yield and the enrichment of non-essential amino acids compared to culture in unmodified, serum-free medium. Adding dichloroacetate, a pyruvate dehydrogenase kinase inhibitor, further improves cell viability, recombinant...