BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 07-22-2020, 05:30 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,734
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default 1H NMR spectroscopy quantifies visibility of lipoproteins, subclasses, and lipids at varied temperatures and pressures.

1H NMR spectroscopy quantifies visibility of lipoproteins, subclasses, and lipids at varied temperatures and pressures.

Related Articles 1H NMR spectroscopy quantifies visibility of lipoproteins, subclasses, and lipids at varied temperatures and pressures.

J Lipid Res. 2019 09;60(9):1516-1534

Authors: Baumstark D, Kremer W, Boettcher A, Schreier C, Sander P, Schmitz G, Kirchhoefer R, Huber F, Kalbitzer HR

Abstract
NMR-based quantification of human lipoprotein (sub)classes is a powerful high-throughput method for medical diagnostics. We evaluated select proton NMR signals of serum lipoproteins for elucidating the physicochemical features and the absolute NMR visibility of their lipids. We separated human lipoproteins of different subclasses by ultracentrifugation and analyzed them by 1H NMR spectroscopy at different temperatures (283-323 K) and pressures (0.1-200 MPa). In parallel, we determined the total lipid content by extraction with chloroform/methanol. The visibility of different lipids in the 1H NMR spectra strongly depends on temperature and pressure: it increases with increasing temperatures but decreases with increasing pressures. Even at 313 K, only part of the lipoprotein is detected quantitatively. In LDL and in HDL subclasses HDL2 and HDL3, only 39%, 62%, and 90% of the total cholesterol and only 73%, 70%, and 87% of the FAs are detected, respectively. The choline head groups show visibilities of 43%, 75%, and 87% for LDL, HDL2, and HDL3, respectively. The description of the NMR visibility of lipid signals requires a minimum model of three different compartments, A, B, and C. The thermodynamic analysis of compartment B leads to melting temperatures between 282 K and 308 K and to enthalpy differences that vary for the different lipoproteins as well as for the reporter groups selected. In summary, we describe differences in NMR visibility of lipoproteins and variations in biophysical responses of functional groups that are crucial for the accuracy of absolute NMR quantification.


PMID: 31239285 [PubMed - indexed for MEDLINE]



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Ischemic Stroke, Myocardial Infarction Both Tied to Lipoproteins, Lipids - Neurology Advisor
http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcQ6Ufj-xt789IPkcyGEnN-VfbqfXo1sXmwauXCDJcCW92AUsOaH3LRihULE16Cu9o99gFOQFwzN Neurology Advisor <img alt="" height="1" width="1"> Ischemic Stroke, Myocardial Infarction Both Tied to Lipoproteins, Lipids Neurology Advisor HealthDay News â?? Lipoproteins and lipids are similarly associated with risk of myocardial infarction (MI) and ischemic stroke (IS) but not intracerebral hemorrhage (ICH), according to a study published in the Journal of the American College of ... Ischemic Stroke, Myocardial Infarction Both Tied to...
nmrlearner Online News 0 02-23-2018 07:13 PM
Lipoproteins, Lipids Similarly Linked With MI, Ischemic Stroke - Renal and Urology News
http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcQwbDOWI2sCrXqX9dgEKCQouN8lUofZC9eryh4L0fQRfS5tLmSeqnq0crRKeE1EjYqZiiS4a7g Renal and Urology News <img alt="" height="1" width="1"> Lipoproteins, Lipids Similarly Linked With MI, Ischemic Stroke Renal and Urology News (HealthDay News) -- Lipoproteins and lipids are similarly associated with risk of myocardial infarction (MI) and ischemic stroke (IS) but not intracerebral hemorrhage (ICH), according to a study published in the Journal of the American College of ... Lipoproteins, Lipids Similarly Linked With MI, Ischemic Stroke...
nmrlearner Online News 0 02-22-2018 02:48 PM
Lipoproteins, lipids have similar ties to MI, ischemic stroke - Medical Xpress
http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcQ_qN-RiXS1PFBZ1_kNVAlYiuV-7ZoCSRSFySR107DA6wGedH9XwUQwUG6RvxY4zeu4cn2ShmKQ Medical Xpress <img alt="" height="1" width="1"> Lipoproteins, lipids have similar ties to MI, ischemic stroke Medical Xpress Nuclear magnetic resonance spectroscopy was used to measure 225 metabolic markers in baseline plasma samples as part of a nested case-control study. Based on samples from 912 MI, 1,146 IS, and 1,138 ICH cases, as well as 1,466 common control subjects ... and more &raquo; Lipoproteins, lipids have similar ties to MI, ischemic...
nmrlearner Online News 0 02-14-2018 04:47 PM
Ethnic differences observed in lipids, lipoproteins for women with prediabetes, obesity - Healio
Ethnic differences observed in lipids, lipoproteins for women with prediabetes, obesity - Healio <img alt="" height="1" width="1"> Ethnic differences observed in lipids, lipoproteins for women with prediabetes, obesity Healio â??In the present study, HDL and ApoA-I, the largest protein of HDL particle, regarded as a potent anti-atherogenic protein, were higher in than women,â?? wrote Trudy Gaillard, PhD, RN, CDE, assistant professor of clinical ... Read here
nmrlearner Online News 0 07-27-2016 09:20 PM
[NMR paper] NMR spectroscopy of macrophages loaded with native, oxidized or enzymatically degraded lipoproteins.
NMR spectroscopy of macrophages loaded with native, oxidized or enzymatically degraded lipoproteins. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.plosone.org-images-pone_120x30.png http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles NMR spectroscopy of macrophages loaded with native, oxidized or enzymatically degraded lipoproteins. PLoS One. 2013;8(2):e56360 Authors: Ramm Sander P, Peer M, Grandl M, Bogdahn U, Schmitz G, Kalbitzer...
nmrlearner Journal club 0 08-29-2013 01:53 PM
Solid-state (2)h NMR shows equivalence of dehydration and osmotic pressures in lipid membrane deformation.
Solid-state (2)h NMR shows equivalence of dehydration and osmotic pressures in lipid membrane deformation. Solid-state (2)h NMR shows equivalence of dehydration and osmotic pressures in lipid membrane deformation. Biophys J. 2011 Jan 5;100(1):98-107 Authors: Mallikarjunaiah KJ, Leftin A, Kinnun JJ, Justice MJ, Rogozea AL, Petrache HI, Brown MF Lipid bilayers represent a fascinating class of biomaterials whose properties are altered by changes in pressure or temperature. Functions of cellular membranes can be affected by nonspecific lipid-protein...
nmrlearner Journal club 0 12-31-2010 07:03 PM
[NMR paper] Lactic acid and protein interactions: implications for the NMR visibility of lactate
Lactic acid and protein interactions: implications for the NMR visibility of lactate in biological systems. Related Articles Lactic acid and protein interactions: implications for the NMR visibility of lactate in biological systems. Biochim Biophys Acta. 1999 Jan 4;1426(1):177-84 Authors: Chatham JC, Forder JR The addition of bovine serum albumin (BSA) to a solution of lactate and alanine resulted in the disappearance of the 1H-NMR resonances from lactate but not alanine. As temperature is increased lactate becomes increasingly NMR visible and...
nmrlearner Journal club 0 11-18-2010 07:05 PM
[NMR paper] A 31P NMR study of mitochondrial inorganic phosphate visibility: effects of Ca2+, Mn2
A 31P NMR study of mitochondrial inorganic phosphate visibility: effects of Ca2+, Mn2+, and the pH gradient. Related Articles A 31P NMR study of mitochondrial inorganic phosphate visibility: effects of Ca2+, Mn2+, and the pH gradient. Biochemistry. 1992 Feb 11;31(5):1322-30 Authors: Hutson SM, Williams GD, Berkich DA, LaNoue KF, Briggs RW The effects of external pH, temperature, and Ca2+ and Mn2+ concentrations on the compartmentation and NMR visibility of inorganic phosphate (Pi) were studied in isolated rat liver mitochondria respiring on...
nmrlearner Journal club 0 08-21-2010 11:41 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 05:45 PM.


Map