17O NMR studies of yeast ubiquitin in aqueous solution and in the solid state.
Chembiochem. 2020 Oct 15;:
Authors: Lin B, Hung I, Gan Z, Chien PH, Spencer H, Smith S, Wu G
Abstract
We report a general method for amino acid-type specific 17 O-labeling of recombinant proteins in Escherichia coli. In particular, we have prepared several [1- 13 C, 17 O]-labeled yeast ubiquitin (Ub) samples including Ub-[1- 13 C, 17 O]Gly, Ub-[1- 13 C, 17 O]Tyr, and Ub-[1- 13 C, 17 O]Phe using the auxotrophic E. coli strain DL39 GlyA l DE3 ( asp C - tyr B - ilv E - gly A - l DE3). We have also produced Ub-[ h - 17 O]Tyr, where the phenolic group of Tyr59 is 17 O-labeled. We showed for the first time that 17 O NMR signals from protein terminal residues and sidechains can be readily detected in aqueous solution. We also reported solid-state 17 O NMR spectra for Ub-[1- 13 C, 17 O]Tyr and Ub-[1- 13 C, 17 O]Phe obtained at an ultrahigh magnetic field, 35.2 T (1.5 GHz for 1 H). This work represents a significant advance in the field of 17 O NMR studies of proteins.
PMID: 33058374 [PubMed - as supplied by publisher]
Uniform isotope labeling of a eukaryotic seven-transmembrane helical protein in yeast enables high-resolution solid-state NMR studies in the lipid environment
Uniform isotope labeling of a eukaryotic seven-transmembrane helical protein in yeast enables high-resolution solid-state NMR studies in the lipid environment
Abstract Overexpression of isotope-labeled multi-spanning eukaryotic membrane proteins for structural NMR studies is often challenging. On the one hand, difficulties with achieving proper folding, membrane insertion, and native-like post-translational modifications frequently disqualify bacterial expression systems. On the other hand, eukaryotic cell cultures can be prohibitively expensive. One of the viable alternatives,...
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Proteins
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01-22-2011 03:46 AM
Uniform isotope labeling of a eukaryotic seven-transmembrane helical protein in yeast enables high-resolution solid-state NMR studies in the lipid environment.
Uniform isotope labeling of a eukaryotic seven-transmembrane helical protein in yeast enables high-resolution solid-state NMR studies in the lipid environment.
Uniform isotope labeling of a eukaryotic seven-transmembrane helical protein in yeast enables high-resolution solid-state NMR studies in the lipid environment.
J Biomol NMR. 2011 Jan 19;
Authors: Fan Y, Shi L, Ladizhansky V, Brown LS
Overexpression of isotope-labeled multi-spanning eukaryotic membrane proteins for structural NMR studies is often challenging. On the one hand, difficulties...
nmrlearner
Journal club
0
01-21-2011 01:22 AM
[NMR paper] High-resolution solid-state NMR studies on uniformly [13C,15N]-labeled ubiquitin.
High-resolution solid-state NMR studies on uniformly -labeled ubiquitin.
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Chembiochem. 2005 Sep;6(9):1638-47
Authors: Seidel K, Etzkorn M, Heise H, Becker S, Baldus M
Understanding of the effects of intermolecular interactions, molecular dynamics, and sample preparation on high-resolution magic-angle spinning NMR data is currently limited. Using the example of a uniformly -labeled sample of ubiquitin, we discuss solid-state NMR methods tailored to the...
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Journal club
0
12-01-2010 06:56 PM
[NMR paper] Ubiquitin binding interface mapping on yeast ubiquitin hydrolase by NMR chemical shif
Ubiquitin binding interface mapping on yeast ubiquitin hydrolase by NMR chemical shift perturbation.
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Biochemistry. 1999 Jul 20;38(29):9242-53
Authors: Rajesh S, Sakamoto T, Iwamoto-Sugai M, Shibata T, Kohno T, Ito Y
The interaction between the 26 kDa yeast ubiquitin hydrolase (YUH1), involved in maintaining the monomeric ubiquitin pool in cells, and the 8.5 kDa yeast ubiquitin protein has been studied by heteronuclear...
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Journal club
0
11-18-2010 08:31 PM
[NMR paper] NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing co
NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions.
Biochemistry. 1997 Apr 1;36(13):3959-70
Authors: Zhang O, Forman-Kay JD
The isolated N-terminal SH3 domain of the Drosophila adapter protein drk (drkN SH3 domain) exists in a dynamic equilibrium between a folded (F(exch)) and an unfolded (U(exch)) state...
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Journal club
0
08-22-2010 03:03 PM
[NMR paper] NMR studies of lantibiotics. The structure of nisin in aqueous solution.
NMR studies of lantibiotics. The structure of nisin in aqueous solution.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif Related Articles NMR studies of lantibiotics. The structure of nisin in aqueous solution.
Eur J Biochem. 1991 Dec 18;202(3):1181-8
Authors: Van de Ven FJ, Van den Hooven HW, Konings RN, Hilbers CW
Nisin is a posttranslationally modified protein of 34 amino acids, and is a member of the class of bacteriocidal polypeptides known...
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Journal club
0
08-21-2010 11:12 PM
[NMR paper] NMR studies of lantibiotics. The structure of nisin in aqueous solution.
NMR studies of lantibiotics. The structure of nisin in aqueous solution.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif Related Articles NMR studies of lantibiotics. The structure of nisin in aqueous solution.
Eur J Biochem. 1991 Dec 18;202(3):1181-8
Authors: Van de Ven FJ, Van den Hooven HW, Konings RN, Hilbers CW
Nisin is a posttranslationally modified protein of 34 amino acids, and is a member of the class of bacteriocidal polypeptides known...