Publication date: Available online 21 May 2015 Source:Journal of Magnetic Resonance
Author(s): Bin Jiang , Binhan Yu , Xu Zhang , Maili Liu , Daiwen Yang
Carr-Purcell Meiboom-Gill (CPMG) relaxation dispersion is a powerful NMR method to study protein dynamics on the microsecond-millisecond time scale. J-coupling, resonance offset and pulse imperfection often introduce systematic errors into the measured transverse relaxation rates. Here we proposed a modified continuous wave decoupling CPMG experiment, which is more unaffected by resonance offset and pulse imperfection. We found that it is unnecessary to match the decoupling field strength with the delay between CPMG refocusing pulses, provided that decoupling field is strong enough. The performance of the scheme proposed here was shown by simulations and further demonstrated experimentally on a fatty acid binding protein. Graphical abstract
Off-resonance rotating-frame relaxation dispersion experiment for 13C in aromatic side chains using L-optimized TROSY-selection
Off-resonance rotating-frame relaxation dispersion experiment for 13C in aromatic side chains using L-optimized TROSY-selection
Abstract
Protein dynamics on the microsecondâ??millisecond time scales often play a critical role in biological function. NMR relaxation dispersion experiments are powerful approaches for investigating biologically relevant dynamics with site-specific resolution, as shown by a growing number of publications on enzyme catalysis, protein folding, ligand binding, and allostery. To date, the majority of studies has probed the...
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06-19-2014 10:21 PM
[NMR paper] Proton-decoupled CPMG: a better experiment for measuring 15N R2 relaxation in disordered proteins
Proton-decoupled CPMG: a better experiment for measuring 15N R2 relaxation in disordered proteins
Publication date: Available online 23 August 2013
Source:Journal of Magnetic Resonance</br>
Author(s): Tairan Yuwen , Nikolai R. Skrynnikov</br>
15N R2 relaxation is one of the most informative experiments for characterization of intrinsically disordered proteins (IDPs). Small changes in nitrogen R2 rates are often used to determine how IDPs respond to various biologically relevant perturbations such as point mutations, posttranslational modifications, weak ligand...
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08-24-2013 03:01 AM
[NMRpipe Yahoo group] Re: CPMG / Relaxation-Dispersion
Re: CPMG / Relaxation-Dispersion
Ronald and other Pipers, My group has developed an interactive GUI-based software package for analysis of dispersion data that you may find useful, named
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11-22-2011 11:27 PM
[NMRpipe Yahoo group] Re: CPMG / Relaxation-Dispersion
Re: CPMG / Relaxation-Dispersion
These are all good comments, many thanks to my fellow Pipers for discussing Ronald's question. Note also, it's possible to extract evolution curves from
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11-22-2011 09:52 AM
[NMRpipe Yahoo group] Re: CPMG / Relaxation-Dispersion
Re: CPMG / Relaxation-Dispersion
Hi Ronald, I am not sure NMRpipe has the routine to do relaxation measurements/analysis. I use Sparky to analyze my CPMG data. In sparky open multiple spectra
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11-22-2011 09:52 AM
[NMRpipe Yahoo group] Re: CPMG / Relaxation-Dispersion
Re: CPMG / Relaxation-Dispersion
Hi Ronald - There are three steps to the analysis of such curves: determining the intensity of each peak, converting those to an apparent R2 value for each
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11-21-2011 08:57 PM
[NMRpipe Yahoo group] CPMG / Relaxation-Dispersion
CPMG / Relaxation-Dispersion
Dear NMRPipers, Does the NMRPipe software have the ability to do CPMG Relaxation-Dispersion analysis? I just finished running a pseudo-3D experiment on our
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