BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 05-21-2015, 04:28 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,777
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default A 15N CPMG relaxation dispersion experiment more resistant to resonance offset and pulse imperfection

A 15N CPMG relaxation dispersion experiment more resistant to resonance offset and pulse imperfection

Publication date: Available online 21 May 2015
Source:Journal of Magnetic Resonance

Author(s): Bin Jiang , Binhan Yu , Xu Zhang , Maili Liu , Daiwen Yang

Carr-Purcell Meiboom-Gill (CPMG) relaxation dispersion is a powerful NMR method to study protein dynamics on the microsecond-millisecond time scale. J-coupling, resonance offset and pulse imperfection often introduce systematic errors into the measured transverse relaxation rates. Here we proposed a modified continuous wave decoupling CPMG experiment, which is more unaffected by resonance offset and pulse imperfection. We found that it is unnecessary to match the decoupling field strength with the delay between CPMG refocusing pulses, provided that decoupling field is strong enough. The performance of the scheme proposed here was shown by simulations and further demonstrated experimentally on a fatty acid binding protein.
Graphical abstract

Highlights








More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Off-resonance rotating-frame relaxation dispersion experiment for 13C in aromatic side chains using L-optimized TROSY-selection
Off-resonance rotating-frame relaxation dispersion experiment for 13C in aromatic side chains using L-optimized TROSY-selection Abstract Protein dynamics on the microsecondâ??millisecond time scales often play a critical role in biological function. NMR relaxation dispersion experiments are powerful approaches for investigating biologically relevant dynamics with site-specific resolution, as shown by a growing number of publications on enzyme catalysis, protein folding, ligand binding, and allostery. To date, the majority of studies has probed the...
nmrlearner Journal club 0 06-19-2014 10:21 PM
[NMR paper] Proton-decoupled CPMG: a better experiment for measuring 15N R2 relaxation in disordered proteins
Proton-decoupled CPMG: a better experiment for measuring 15N R2 relaxation in disordered proteins Publication date: Available online 23 August 2013 Source:Journal of Magnetic Resonance</br> Author(s): Tairan Yuwen , Nikolai R. Skrynnikov</br> 15N R2 relaxation is one of the most informative experiments for characterization of intrinsically disordered proteins (IDPs). Small changes in nitrogen R2 rates are often used to determine how IDPs respond to various biologically relevant perturbations such as point mutations, posttranslational modifications, weak ligand...
nmrlearner Journal club 0 08-24-2013 03:01 AM
[NMRpipe Yahoo group] Re: CPMG / Relaxation-Dispersion
Re: CPMG / Relaxation-Dispersion Ronald and other Pipers, My group has developed an interactive GUI-based software package for analysis of dispersion data that you may find useful, named More...
NMRpipe Yahoo group news News from other NMR forums 0 11-22-2011 11:27 PM
[NMRpipe Yahoo group] Re: CPMG / Relaxation-Dispersion
Re: CPMG / Relaxation-Dispersion These are all good comments, many thanks to my fellow Pipers for discussing Ronald's question. Note also, it's possible to extract evolution curves from More...
NMRpipe Yahoo group news News from other NMR forums 0 11-22-2011 09:52 AM
[NMRpipe Yahoo group] Re: CPMG / Relaxation-Dispersion
Re: CPMG / Relaxation-Dispersion Hi Ronald, I am not sure NMRpipe has the routine to do relaxation measurements/analysis. I use Sparky to analyze my CPMG data. In sparky open multiple spectra More...
NMRpipe Yahoo group news News from other NMR forums 0 11-22-2011 09:52 AM
[NMRpipe Yahoo group] Re: CPMG / Relaxation-Dispersion
Re: CPMG / Relaxation-Dispersion Hi Ronald - There are three steps to the analysis of such curves: determining the intensity of each peak, converting those to an apparent R2 value for each More...
NMRpipe Yahoo group news News from other NMR forums 0 11-21-2011 08:57 PM
[NMRpipe Yahoo group] CPMG / Relaxation-Dispersion
CPMG / Relaxation-Dispersion Dear NMRPipers, Does the NMRPipe software have the ability to do CPMG Relaxation-Dispersion analysis? I just finished running a pseudo-3D experiment on our More...
NMRpipe Yahoo group news News from other NMR forums 0 11-21-2011 08:57 PM
Presentation on CPMG relaxation dispersion experiments
Presentation on CPMG relaxation dispersion experiments From A. Mittermaier -- LEK lab More...
nmrlearner General 0 04-14-2011 01:30 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 07:09 PM.


Map