Related Articles13C NMR determination of the tautomeric and ionization states of folate in its complexes with Lactobacillus casei dihydrofolate reductase.
13C NMR studies provide a convenient way of obtaining detailed information about tautomeric and ionization states in protein-ligand complexes provided that suitably 13C-labeled molecules are available. In the present study, [4,6,8a-13C]- and [2,4a,7,9-13C]folic acid were synthesized and the 13C NMR spectra of their complexes with Lactobacillus casei dihydrofolate reductase (DHFR) were assigned and analyzed as a function of pH. From these data it was possible to determine the tautomeric and ionization states of the bound folate and to obtain further evidence about the orientation of the pteridine ring in the complexes. In the 13C spectra of the ternary complexes of the 13C-labeled folic acids with DHFR and NADP+, each labeled carbon gave rise to multiple signals, confirming our previous findings that there are three interconverting conformational forms of bound folate (forms I, IIa, and IIb) in the ternary complex (Birdsall et al., 1989b). The 13C spectra of the binary complexes of folate and DHFR also provide direct evidence for the presence of forms IIa and IIb and indirect evidence of some form I at low pH values ( < 5.0). 2D 1H-13C HMQC-NOESY experiments on ternary complexes formed using the [2,4a,7,9-13C]folic acid were used to obtain intermolecular NOEs between the folate H7 proton and protons on the protein, and these provided further characterization of the orientations of the pteridine ring in the different bound forms of folate (form IIb with its pteridine ring in the catalytically active conformation and forms I and IIa with their pteridine rings turned over by 180 degrees).(ABSTRACT TRUNCATED AT 250 WORDS)
[NMR paper] Ionization properties of titratable groups in ribonuclease T1. I. pKa values in the n
Ionization properties of titratable groups in ribonuclease T1. I. pKa values in the native state determined by two-dimensional heteronuclear NMR spectroscopy.
Related Articles Ionization properties of titratable groups in ribonuclease T1. I. pKa values in the native state determined by two-dimensional heteronuclear NMR spectroscopy.
Eur Biophys J. 2001 Jul;30(3):186-97
Authors: Spitzner N, Löhr F, Pfeiffer S, Koumanov A, Karshikoff A, Rüterjans H
pKa values of amino acid side chains of ribonuclease T1 have been determined from the pH...
nmrlearner
Journal club
0
11-19-2010 08:44 PM
[NMR paper] High pressure NMR reveals active-site hinge motion of folate-bound Escherichia coli d
High pressure NMR reveals active-site hinge motion of folate-bound Escherichia coli dihydrofolate reductase.
Related Articles High pressure NMR reveals active-site hinge motion of folate-bound Escherichia coli dihydrofolate reductase.
Biochemistry. 2000 Oct 24;39(42):12789-95
Authors: Kitahara R, Sareth S, Yamada H, Ohmae E, Gekko K, Akasaka K
A high-pressure (15)N/(1)H two-dimensional NMR study has been carried out on folate-bound dihydrofolate reductase (DHFR) from Escherichia coli in the pressure range between 30 and 2000 bar. Several...
nmrlearner
Journal club
0
11-19-2010 08:29 PM
[NMR paper] Individual ionization constants of all the carboxyl groups in ribonuclease HI from Es
Individual ionization constants of all the carboxyl groups in ribonuclease HI from Escherichia coli determined by NMR.
Related Articles Individual ionization constants of all the carboxyl groups in ribonuclease HI from Escherichia coli determined by NMR.
Biochemistry. 1994 May 3;33(17):5275-84
Authors: Oda Y, Yamazaki T, Nagayama K, Kanaya S, Kuroda Y, Nakamura H
All of the individual carboxyl groups (the side-chain carboxyl groups of Asp and Glu, and the C-terminal alpha-carboxyl group) in Escherichia coli ribonuclease HI, which is an enzyme...
nmrlearner
Journal club
0
08-22-2010 03:33 AM
[NMR paper] Individual ionization constants of all the carboxyl groups in ribonuclease HI from Es
Individual ionization constants of all the carboxyl groups in ribonuclease HI from Escherichia coli determined by NMR.
Related Articles Individual ionization constants of all the carboxyl groups in ribonuclease HI from Escherichia coli determined by NMR.
Biochemistry. 1994 May 3;33(17):5275-84
Authors: Oda Y, Yamazaki T, Nagayama K, Kanaya S, Kuroda Y, Nakamura H
All of the individual carboxyl groups (the side-chain carboxyl groups of Asp and Glu, and the C-terminal alpha-carboxyl group) in Escherichia coli ribonuclease HI, which is an enzyme...
nmrlearner
Journal club
0
08-22-2010 03:33 AM
[NMR paper] Tautomeric states of the active-site histidines of phosphorylated and unphosphorylate
Tautomeric states of the active-site histidines of phosphorylated and unphosphorylated IIIGlc, a signal-transducing protein from Escherichia coli, using two-dimensional heteronuclear NMR techniques.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Tautomeric states of the active-site histidines of phosphorylated and unphosphorylated IIIGlc, a...
nmrlearner
Journal club
0
08-21-2010 11:53 PM
[NMR paper] NMR characterization of surface interactions in the cytochrome b5-cytochrome c comple
NMR characterization of surface interactions in the cytochrome b5-cytochrome c complex.
Related Articles NMR characterization of surface interactions in the cytochrome b5-cytochrome c complex.
Science. 1990 Feb 16;247(4944):831-3
Authors: Burch AM, Rigby SE, Funk WD, MacGillivray RT, Mauk MR, Mauk AG, Moore GR
The complex formed in solution by native and chemically modified cytochrome c with cytochrome b5 has been studied by 1H and 13C nuclear magnetic resonance spectroscopy (NMR). Contrary to predictions of recent theoretical analysis, 1H NMR...
nmrlearner
Journal club
0
08-21-2010 10:48 PM
[NMR paper] Dynamic DNA contacts observed in the NMR structure of winged helix protein-DNA comple
Dynamic DNA contacts observed in the NMR structure of winged helix protein-DNA complex.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Dynamic DNA contacts observed in the NMR structure of winged helix protein-DNA complex.
J Mol Biol. 1999 Jun 18;289(4):683-90
Authors: Jin C, Marsden I, Chen X, Liao X
Genesis is an HNF-3/fkh homologous protein. By using multi-dimensional NMR techniques, we have obtained the solution structure and backbone dynamics of Genesis complexed...
nmrlearner
Journal club
0
08-21-2010 04:03 PM
A Solid-State (17)O NMR Study of l-Tyrosine in Different Ionization States: Implicati
A Solid-State (17)O NMR Study of l-Tyrosine in Different Ionization States: Implications for Probing Tyrosine Side Chains in Proteins.
Related Articles A Solid-State (17)O NMR Study of l-Tyrosine in Different Ionization States: Implications for Probing Tyrosine Side Chains in Proteins.
J Phys Chem B. 2010 Aug 16;
Authors: Zhu J, Lau JY, Wu G
We report experimental characterization of (17)O quadrupole coupling (QC) and chemical shift (CS) tensors for the phenolic oxygen in three l-tyrosine (l-Tyr) compounds: l-Tyr, l-Tyr.HCl, and Na(2)(l-Tyr)....