[ASAP] Why Are Gly31, Gly33, and Gly35 Highly Conserved in All Fluorescent Proteins?

		BioNMR > Educational resources > Journal club
[ASAP] Why Are Gly31, Gly33, and Gly35 Highly Conserved in All Fluorescent Proteins?

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

11-23-2021, 03:23 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Why Are Gly31, Gly33, and Gly35 Highly Conserved in All Fluorescent Proteins?

[ASAP] Why Are Gly31, Gly33, and Gly35 Highly Conserved in All Fluorescent Proteins?

Biochemistry
DOI: 10.1021/acs.biochem.1c00587

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Conserved Structural Motif Identified in Peptides That Bind to Geminivirus Replication Protein Rep Conserved Structural Motif Identified in Peptides That Bind to Geminivirus Replication Protein Rep https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.1c00408/20210831/images/medium/bi1c00408_0007.gif Biochemistry DOI: 10.1021/acs.biochem.1c00408 http://feeds.feedburner.com/~r/acs/bichaw/~4/DkFk0O3oPso More...	nmrlearner	Journal club	0	09-02-2021 02:00 AM
[ASAP] Structural Origins of Altered Spectroscopic Properties upon Ligand Binding in Proteins Containing a Fluorescent Noncanonical Amino Acid Structural Origins of Altered Spectroscopic Properties upon Ligand Binding in Proteins Containing a Fluorescent Noncanonical Amino Acid https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.1c00291/20210820/images/medium/bi1c00291_0005.gif Biochemistry DOI: 10.1021/acs.biochem.1c00291 http://feeds.feedburner.com/~r/acs/bichaw/~4/5y49sXPSIqM More...	nmrlearner	Journal club	0	08-21-2021 06:41 AM
[ASAP] Site-Specific Fragmentation of Green Fluorescent Protein Induced by Blue Light Site-Specific Fragmentation of Green Fluorescent Protein Induced by Blue Light https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.1c00248/20210727/images/medium/bi1c00248_0006.gif Biochemistry DOI: 10.1021/acs.biochem.1c00248 http://feeds.feedburner.com/~r/acs/bichaw/~4/AbxJbxqc658 More...	nmrlearner	Journal club	0	07-30-2021 01:42 AM
Solution NMR structure of Se0862, a highly conserved cyanobacterial protein involved in biofilm formation Solution NMR structure of Se0862, a highly conserved cyanobacterial protein involved in biofilm formation Abstract Biofilms are accumulations of microorganisms embedded in extracellular matrices that protect against external factors and stressful environments. Cyanobacterial biofilms are ubiquitous and have potential for treatment of wastewater and sustainable production of biofuels. But the underlying mechanisms regulating cyanobacterial biofilm formation are unclear. Here, we report the solution NMR structure of a protein, Se0862, conserved across diverse cyanobacterial species and...	nmrlearner	Journal club	0	10-25-2020 01:39 PM
Solution NMR structure of Se0862, a highly conserved cyanobacterial protein involved in biofilm formation Solution NMR structure of Se0862, a highly conserved cyanobacterial protein involved in biofilm formation ABSTRACT Biofilms are accumulations of microorganisms embedded in extracellular matrices that protect against external factors and stressful environments. Cyanobacterial biofilms are ubiquitous and have potential for treatment of wastewater and sustainable production of biofuels. But the underlying mechanisms regulating cyanobacterial biofilm formation are unclear. Here, we report the solution NMR structure of a protein, Se0862, conserved across diverse cyanobacterial species and...	nmrlearner	Journal club	0	09-21-2020 05:44 PM
[NMR paper] Solution NMR structure of Se0862, a highly conserved cyanobacterial protein involved in biofilm formation. Solution NMR structure of Se0862, a highly conserved cyanobacterial protein involved in biofilm formation. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--media.wiley.com-assets-7388-69-wiley-full-text.png Related Articles Solution NMR structure of Se0862, a highly conserved cyanobacterial protein involved in biofilm formation. Protein Sci. 2020 Sep 18;: Authors: Zhang N, Chang YG, Tseng R, Ovchinnikov S, Schwarz R, LiWang A Abstract Biofilms are accumulations of microorganisms embedded in...	nmrlearner	Journal club	0	09-21-2020 05:44 PM
[ASAP] Discovery and Characterization of a Naturally Occurring, Turn-On Yellow Fluorescent Protein Sensor for Chloride Discovery and Characterization of a Naturally Occurring, Turn-On Yellow Fluorescent Protein Sensor for Chloride https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00928/20181120/images/medium/bi-2018-00928q_0005.gif Biochemistry DOI: 10.1021/acs.biochem.8b00928 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/SABhMN2h168 More...	nmrlearner	Journal club	0	11-25-2018 06:02 AM
A Highly Conserved Leucine in Mammarenavirus Matrix Z Protein Is Required for Z Interaction with the Virus L ... - Journal of Virology A Highly Conserved Leucine in Mammarenavirus Matrix Z Protein Is Required for Z Interaction with the Virus L ... - Journal of Virology <img alt="" height="1" width="1"> A Highly Conserved Leucine in Mammarenavirus Matrix Z Protein Is Required for Z Interaction with the Virus L ... Journal of Virology To gain a better understanding of how the Z protein exerts its several different functions, we investigated the interaction between Z and viral polymerase L protein using the prototypic mammarenavirus, lymphocytic choriomeningitis virus (LCMV). We ... Read here	nmrlearner	Online News	0	05-15-2018 03:38 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off