[ASAP] The Thioredoxin System Reduces Protein Persulfide Intermediates Formed during the Synthesis of Thio-Cofactors in Bacillus subtilis

		BioNMR > Educational resources > Journal club
[ASAP] The Thioredoxin System Reduces Protein Persulfide Intermediates Formed during the Synthesis of Thio-Cofactors in Bacillus subtilis

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-24-2019, 10:41 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] The Thioredoxin System Reduces Protein Persulfide Intermediates Formed during the Synthesis of Thio-Cofactors in Bacillus subtilis

[ASAP] The Thioredoxin System Reduces Protein Persulfide Intermediates Formed during the Synthesis of Thio-Cofactors in Bacillus subtilis

Biochemistry
DOI: 10.1021/acs.biochem.9b00045

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Protein Cofactors Are Essential for High-Affinity DNA Binding by the Nuclear Factor ?B RelA Subunit Protein Cofactors Are Essential for High-Affinity DNA Binding by the Nuclear Factor ?B RelA Subunit https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00158/20180510/images/medium/bi-2018-00158n_0008.gif Biochemistry DOI: 10.1021/acs.biochem.8b00158 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/rXyQ6LQcqmc More...	nmrlearner	Journal club	0	05-11-2018 01:53 AM
Encapsulation and Controlled Release of Protein Guestsby the Bacillus subtilis Lumazine Synthase Capsid Encapsulation and Controlled Release of Protein Guestsby the Bacillus subtilis Lumazine Synthase Capsid http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00669/20171109/images/medium/bi-2017-00669g_0008.gif Biochemistry DOI: 10.1021/acs.biochem.7b00669 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/AC_v-A7xoyg More...	nmrlearner	Journal club	0	11-10-2017 05:01 PM
[NMR paper] Electrostatic Energetics of Bacillus subtilis Ribonuclease P Protein by NMR-based Histidine pKa Measurements. Electrostatic Energetics of Bacillus subtilis Ribonuclease P Protein by NMR-based Histidine pKa Measurements. Electrostatic Energetics of Bacillus subtilis Ribonuclease P Protein by NMR-based Histidine pKa Measurements. Biochemistry. 2015 Aug 12; Authors: Mosley PL, Daniels KG, Oas TG Abstract The pKa values of ionizable groups in proteins report the free energy of site-specific proton binding and provide a direct means of studying pH-dependent stability. We measured histidine pKa values (H3, H22, and H105) in the unfolded...	nmrlearner	Journal club	0	08-13-2015 02:00 PM
NMR resonance assignment of the autoimmunity protein SpaI from Bacillus subtilis ATCC 6633. NMR resonance assignment of the autoimmunity protein SpaI from Bacillus subtilis ATCC 6633. NMR resonance assignment of the autoimmunity protein SpaI from Bacillus subtilis ATCC 6633. Biomol NMR Assign. 2011 Jun 5; Authors: Christ NA, Duchardt-Ferner E, Düsterhus S, Kötter P, Entian KD, Wöhnert J Bacillus subtilis ATCC 6633 produces the lipid II targeting lantibiotic subtilin. For self-protection these gram-positive bacteria express a cluster of four self-immunity proteins named SpaIFEG. SpaI is a 16.8*kDa lipoprotein which is attached to the...	nmrlearner	Journal club	0	06-07-2011 11:05 AM
[NMR paper] NMR assignment of new thioredoxin-like protein YkuV from Bacillus subtilis. NMR assignment of new thioredoxin-like protein YkuV from Bacillus subtilis. Related Articles NMR assignment of new thioredoxin-like protein YkuV from Bacillus subtilis. J Biomol NMR. 2005 Jul;32(3):258 Authors: Zhang X, Yu C, Xia B, Jin C	nmrlearner	Journal club	0	12-01-2010 06:56 PM
[NMR paper] Interaction of the replication terminator protein of Bacillus subtilis with DNA probed by NMR spectroscopy. Interaction of the replication terminator protein of Bacillus subtilis with DNA probed by NMR spectroscopy. Related Articles Interaction of the replication terminator protein of Bacillus subtilis with DNA probed by NMR spectroscopy. Biochem Biophys Res Commun. 2005 Sep 23;335(2):361-6 Authors: Hastings AF, Otting G, Folmer RH, Duggin IG, Wake RG, Wilce MC, Wilce JA Termination of DNA replication in Bacillus subtilis involves the polar arrest of replication forks by a specific complex formed between the dimeric 29 kDa replication terminator...	nmrlearner	Journal club	0	12-01-2010 06:56 PM
Probing the Folding Intermediate of Bacillus subtilis RNase P protein by NMR. Probing the Folding Intermediate of Bacillus subtilis RNase P protein by NMR. Related Articles Probing the Folding Intermediate of Bacillus subtilis RNase P protein by NMR. Biochemistry. 2010 Sep 15; Authors: Chang YC, Franch WR, Oas TG Protein folding intermediates are often imperative to overall folding processes and consequent biological functions. However, the low population and transient nature of the intermediate states often hinder the biochemical and biophysical characterization. Previous studies have demonstrated that Bacillus...	nmrlearner	Journal club	0	09-17-2010 04:14 PM
[NMR paper] Solution structure of the phosphocarrier protein HPr from Bacillus subtilis by two-di Solution structure of the phosphocarrier protein HPr from Bacillus subtilis by two-dimensional NMR spectroscopy. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Solution structure of the phosphocarrier protein HPr from Bacillus subtilis by two-dimensional NMR spectroscopy. Protein Sci. 1992 Oct;1(10):1363-76 Authors: Wittekind...	nmrlearner	Journal club	0	08-21-2010 11:45 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off