[ASAP] Substrate Activation of the Low-Molecular Weight Protein Tyrosine Phosphatase from Mycobacterium tuberculosis

		BioNMR > Educational resources > Journal club
[ASAP] Substrate Activation of the Low-Molecular Weight Protein Tyrosine Phosphatase from Mycobacterium tuberculosis

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-16-2020, 04:59 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Substrate Activation of the Low-Molecular Weight Protein Tyrosine Phosphatase from Mycobacterium tuberculosis

[ASAP] Substrate Activation of the Low-Molecular Weight Protein Tyrosine Phosphatase from Mycobacterium tuberculosis

Biochemistry
DOI: 10.1021/acs.biochem.0c00059

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Structural and Biophysical Characterization of the Mycobacterium tuberculosis Protein Rv0577, a Protein Associatedwith Neutral Red Staining of Virulent Tuberculosis Strains and Homologueof the Streptomyces coelicolor Protein KbpA Structural and Biophysical Characterization of the Mycobacterium tuberculosis Protein Rv0577, a Protein Associatedwith Neutral Red Staining of Virulent Tuberculosis Strains and Homologueof the Streptomyces coelicolor Protein KbpA http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00511/20170725/images/medium/bi-2017-00511e_0010.gif Biochemistry DOI: 10.1021/acs.biochem.7b00511 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/e01E7kEsi3k More...	nmrlearner	Journal club	0	07-26-2017 10:20 AM
Structural Insights into Mycobacterium tuberculosis Rv2671 Protein as a Dihydrofolate Reductase Functional AnalogueContributing to para-Aminosalicylic Acid Resistance Structural Insights into Mycobacterium tuberculosis Rv2671 Protein as a Dihydrofolate Reductase Functional AnalogueContributing to para-Aminosalicylic Acid Resistance http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.5b00993/20160205/images/medium/bi-2015-009933_0008.gif Biochemistry DOI: 10.1021/acs.biochem.5b00993 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/7-ZFbwbzVMM More...	nmrlearner	Journal club	0	02-06-2016 03:10 PM
Trichoketides A and B, two new protein tyrosine phosphatase 1B inhibitors from ... - Nature.com Trichoketides A and B, two new protein tyrosine phosphatase 1B inhibitors from ... - Nature.com <img alt="" height="1" width="1"> Trichoketides A and B, two new protein tyrosine phosphatase 1B inhibitors from ... Nature.com The 1H and 13C NMR spectra (in acetone-d6) showed 23 proton and 16 carbon signals (Table 1) that were classified into one methyl, eight sp3 methylene, two sp3 oxygenated methine, two sp2 methine, two sp2 quaternary and one carbonyl carbons through ... Read here	nmrlearner	Online News	0	04-22-2015 03:33 PM
Expression, Purification and Preliminary Solid State NMR Experiments of Mycobacterium Tuberculosis FtsX Membrane Protein Expression, Purification and Preliminary Solid State NMR Experiments of Mycobacterium Tuberculosis FtsX Membrane Protein Publication date: 28 January 2014 Source:Biophysical Journal, Volume 106, Issue 2, Supplement 1</br> Author(s): Cristian A. Escobar , Timothy A. Cross</br> </br></br> </br></br> More...	nmrlearner	Journal club	0	01-29-2014 12:50 AM
[NMR paper] NMR assignment of protein Rv1980c from Mycobacterium tuberculosis. NMR assignment of protein Rv1980c from Mycobacterium tuberculosis. Related Articles NMR assignment of protein Rv1980c from Mycobacterium tuberculosis. J Biomol NMR. 2005 Sep;33(1):73 Authors: Danahy JM, Potter BM, Geisbrecht BV, Laity JH	nmrlearner	Journal club	0	12-01-2010 06:56 PM
[NMR paper] NMR assignments of a low molecular weight protein tyrosine phosphatase (PTPase) from NMR assignments of a low molecular weight protein tyrosine phosphatase (PTPase) from Bacillus subtilis. Related Articles NMR assignments of a low molecular weight protein tyrosine phosphatase (PTPase) from Bacillus subtilis. J Biomol NMR. 2005 Apr;31(4):363 Authors: Xu H, Zhang P, Jin C	nmrlearner	Journal club	0	11-25-2010 08:21 PM
[NMR paper] Intramolecular dynamics of low molecular weight protein tyrosine phosphatase in monom Intramolecular dynamics of low molecular weight protein tyrosine phosphatase in monomer-dimer equilibrium studied by NMR: a model for changes in dynamics upon target binding. Related Articles Intramolecular dynamics of low molecular weight protein tyrosine phosphatase in monomer-dimer equilibrium studied by NMR: a model for changes in dynamics upon target binding. J Mol Biol. 2002 Sep 6;322(1):137-52 Authors: Akerud T, Thulin E, Van Etten RL, Akke M Low molecular weight protein tyrosine phosphatase (LMW-PTP) dimerizes in the phosphate-bound...	nmrlearner	Journal club	0	11-24-2010 08:58 PM
Novel Small Molecule Inhibitors of MDR Mycobacterium tuberculosis by NMR Fragment Scr Novel Small Molecule Inhibitors of MDR Mycobacterium tuberculosis by NMR Fragment Screening of Antigen 85C. Related Articles Novel Small Molecule Inhibitors of MDR Mycobacterium tuberculosis by NMR Fragment Screening of Antigen 85C. J Med Chem. 2010 Nov 12; Authors: Scheich C, Puetter V, Schade M Protein target-based discovery of novel antibiotics has been largely unsuccessful despite rich genome information. Particularly in need are new antibiotics for tuberculosis, which kills 1.6 million people annually and shows a rapid increase in...	nmrlearner	Journal club	0	11-16-2010 04:13 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off