[ASAP] Role of Charged Amino Acids in Sullying the Fluorescenceof Tryptophan or Conjugated Dansyl Probe in Monomeric Proteins

		BioNMR > Educational resources > Journal club
[ASAP] Role of Charged Amino Acids in Sullying the Fluorescenceof Tryptophan or Conjugated Dansyl Probe in Monomeric Proteins

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-05-2022, 02:49 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Role of Charged Amino Acids in Sullying the Fluorescenceof Tryptophan or Conjugated Dansyl Probe in Monomeric Proteins

[ASAP] Role of Charged Amino Acids in Sullying the Fluorescenceof Tryptophan or Conjugated Dansyl Probe in Monomeric Proteins

Biochemistry
DOI: 10.1021/acs.biochem.1c00753

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] In vitro-Constructed Ribosomes Enable Multi-site Incorporation of Noncanonical Amino Acids into Proteins In vitro-Constructed Ribosomes Enable Multi-site Incorporation of Noncanonical Amino Acids into Proteins https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00829/20210111/images/medium/bi0c00829_0006.gif Biochemistry DOI: 10.1021/acs.biochem.0c00829 http://feeds.feedburner.com/~r/acs/bichaw/~4/ka6wq8GcKfY More...	nmrlearner	Journal club	0	01-13-2021 08:38 AM
Revealing the role of the mysterious small proteins: Classifying proteins with less than 100 amino acids - Science Daily Revealing the role of the mysterious small proteins: Classifying proteins with less than 100 amino acids - Science Daily Revealing the role of the mysterious small proteins: Classifying proteins with less than 100 amino acids Science DailyInvestigators develop a technique to identify and classify proteins with less than 100 amino acids. These types of proteins account for only 16 percent of a ... Read here	nmrlearner	Online News	0	03-25-2019 08:37 PM
Laser-assisted NMR in the Presence of a Cryogenic Probe Enables Multidimensional Data Collection on Amino Acids and Proteins at Unprecedented Sensitivity Laser-assisted NMR in the Presence of a Cryogenic Probe Enables Multidimensional Data Collection on Amino Acids and Proteins at Unprecedented Sensitivity Publication date: 2 February 2018 Source:Biophysical Journal, Volume 114, Issue 3, Supplement 1</br> Author(s): Miranda Mecha, Yusuke Okuno, Hanming Yang, Silvia Cavagnero</br> </br></br> </br></br> More...	nmrlearner	Journal club	0	02-07-2018 03:41 PM
[NMR paper] Facilitating unambiguous NMR assignments and enabling higher probe density through selective labeling of all methyl containing amino acids. Facilitating unambiguous NMR assignments and enabling higher probe density through selective labeling of all methyl containing amino acids. Related Articles Facilitating unambiguous NMR assignments and enabling higher probe density through selective labeling of all methyl containing amino acids. J Biomol NMR. 2016 Apr 29; Authors: Proudfoot A, Frank AO, Ruggiu F, Mamo M, Lingel A Abstract The deuteration of proteins and selective labeling of side chain methyl groups has greatly enhanced the molecular weight range of proteins...	nmrlearner	Journal club	0	05-01-2016 10:32 PM
Facilitating unambiguous NMR assignments and enabling higher probe density through selective labeling of all methyl containing amino acids Facilitating unambiguous NMR assignments and enabling higher probe density through selective labeling of all methyl containing amino acids Abstract The deuteration of proteins and selective labeling of side chain methyl groups has greatly enhanced the molecular weight range of proteins and protein complexes which can be studied using solution NMR spectroscopy. Protocols for the selective labeling of all six methyl group containing amino acids individually are available, however to date, only a maximum of five amino acids have been labeled...	nmrlearner	Journal club	0	04-30-2016 09:26 AM
[NMR paper] Thermodynamic and solution state NMR characterization of the binding of secondary and conjugated bile acids to STARD5. Thermodynamic and solution state NMR characterization of the binding of secondary and conjugated bile acids to STARD5. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Thermodynamic and solution state NMR characterization of the binding of secondary and conjugated bile acids to STARD5. Biochim Biophys Acta. 2013 Jul 16; Authors: Létourneau D, Lorin A, Lefebvre A, Cabana J, Lavigne P, Lehoux JG Abstract STARD5 is a member of the STARD4 sub-family...	nmrlearner	Journal club	0	07-23-2013 09:52 PM
[NMR paper] Photo-CIDNP NMR Spectroscopy of Amino Acids and Proteins. Photo-CIDNP NMR Spectroscopy of Amino Acids and Proteins. Related Articles Photo-CIDNP NMR Spectroscopy of Amino Acids and Proteins. Top Curr Chem. 2013 May 14; Authors: Kuhn LT Abstract Photo-chemically induced dynamic nuclear polarization (CIDNP) is a nuclear magnetic resonance (NMR) phenomenon which, among other things, is exploited to extract information on biomolecular structure via probing solvent-accessibilities of tryptophan (Trp), tyrosine (Tyr), and histidine (His) amino acid side chains both in polypeptides and proteins in...	nmrlearner	Journal club	0	05-15-2013 03:12 PM
The Role of Basic Amino Acids in the Molecular Recognition of Hydroxyapatite by Stath The Role of Basic Amino Acids in the Molecular Recognition of Hydroxyapatite by Statherin using Solid State NMR. Related Articles The Role of Basic Amino Acids in the Molecular Recognition of Hydroxyapatite by Statherin using Solid State NMR. Surf Sci. 2010 Aug 15;604(15-16):L39-L42 Authors: Ndao M, Ash JT, Stayton PS, Drobny GP Organisms use proteins such as statherin to control the growth of hydroxyapatite (HAP), which is the principal component of teeth and bone. Though much emphasis has been placed on the acidic character of these...	nmrlearner	Journal club	0	08-17-2010 03:36 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off