[ASAP] Proteins as Sustainable Building Blocks for the Next Generation of Bioinorganic Nanomaterials

		BioNMR > Educational resources > Journal club
[ASAP] Proteins as Sustainable Building Blocks for the Next Generation of Bioinorganic Nanomaterials

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

11-25-2018, 06:02 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Proteins as Sustainable Building Blocks for the Next Generation of Bioinorganic Nanomaterials

[ASAP] Proteins as Sustainable Building Blocks for the Next Generation of Bioinorganic Nanomaterials

Biochemistry
DOI: 10.1021/acs.biochem.8b00966

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Bioinorganic Explorations of Zn(II) Sequestrationby Human S100 Host-Defense Proteins Bioinorganic Explorations of Zn(II) Sequestrationby Human S100 Host-Defense Proteins https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b01305/20180306/images/medium/bi-2017-01305n_0004.gif Biochemistry DOI: 10.1021/acs.biochem.7b01305 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/NrEwYTSUco0 More...	nmrlearner	Journal club	0	03-07-2018 08:13 AM
Generation and Characterization of Recombinant Antibody-likeADP-Ribose Binding Proteins Generation and Characterization of Recombinant Antibody-likeADP-Ribose Binding Proteins http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00670/20171121/images/medium/bi-2017-006705_0006.gif Biochemistry DOI: 10.1021/acs.biochem.7b00670 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/UYnxTupHhQc More...	nmrlearner	Journal club	0	11-23-2017 08:38 AM
[NMR paper] Synthesis and incorporation of 13C-labeled DNA building blocks to probe structural dynamics of DNA by NMR. Synthesis and incorporation of 13C-labeled DNA building blocks to probe structural dynamics of DNA by NMR. Related Articles Synthesis and incorporation of 13C-labeled DNA building blocks to probe structural dynamics of DNA by NMR. Nucleic Acids Res. 2017 Sep 06;45(15):9178-9192 Authors: Nußbaumer F, Juen MA, Gasser C, Kremser J, Müller T, Tollinger M, Kreutz C Abstract We report the synthesis of atom-specifically 13C-modified building blocks that can be incorporated into DNA via solid phase synthesis to facilitate investigations...	nmrlearner	Journal club	0	09-16-2017 09:58 PM
Protein Assembly and Building Blocks: Beyond the Limitsof the LEGO Brick Metaphor Protein Assembly and Building Blocks: Beyond the Limitsof the LEGO Brick Metaphor http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00666/20170830/images/medium/bi-2017-006667_0004.gif Biochemistry DOI: 10.1021/acs.biochem.7b00666 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/_mVOizsSYuA More...	nmrlearner	Journal club	0	09-01-2017 05:57 AM
Replication Protein A Blocks the Way Replication Protein A Blocks the Way http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00221/20170323/images/medium/bi-2017-00221y_0001.gif Biochemistry DOI: 10.1021/acs.biochem.7b00221 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/yVnWE43laMc More...	nmrlearner	Journal club	0	03-24-2017 10:00 AM
[NMR] PhD position / Solid-State NMR / Utrecht / Bio-inspired Nanomaterials From The DNP-NMR Blog: PhD position / Solid-State NMR / Utrecht / Bio-inspired Nanomaterials From the Ampere Magnetic Resonance List PhD position / Solid-State NMR / Utrecht / Bio-inspired Nanomaterials	nmrlearner	News from NMR blogs	0	12-09-2015 09:03 AM
[NMR900 blog] Encyclopedia of Inorganic and Bioinorganic Chemistry Encyclopedia of Inorganic and Bioinorganic Chemistry A selection of NMR papers by Canadian researchers from the Encyclopedia of Inorganic and Bioinorganic Chemistry (EIBC), a new 10,000+ page reference tool in the area of inorganic and bioinorganic chemistry. http://dx.doi.org/10.1002/9781119951438 Please let us know if we have missed/overlooked your chapter! S.M. Gagné, "Troponin C," Encyclopedia of Inorganic and Bioinorganic Chemistry, Wiley (2011). http://dx.doi.org/10.1002/9781119951438.eibc0505	nmrlearner	News from NMR blogs	0	12-13-2011 02:46 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off