[ASAP] Protein Dynamics Influence the Enzymatic Activity of Phospholipase A/Acyltransferases 3 and 4

		BioNMR > Educational resources > Journal club
[ASAP] Protein Dynamics Influence the Enzymatic Activity of Phospholipase A/Acyltransferases 3 and 4

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-22-2021, 09:15 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Protein Dynamics Influence the Enzymatic Activity of Phospholipase A/Acyltransferases 3 and 4

[ASAP] Protein Dynamics Influence the Enzymatic Activity of Phospholipase A/Acyltransferases 3 and 4

Biochemistry
DOI: 10.1021/acs.biochem.0c00974

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] The Burden Borne by Protein Methyltransferases: Rates and Equilibria of Non-enzymatic Methylation of Amino Acid Side Chains by SAM in Water The Burden Borne by Protein Methyltransferases: Rates and Equilibria of Non-enzymatic Methylation of Amino Acid Side Chains by SAM in Water https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.1c00028/20210305/images/medium/bi1c00028_0005.gif Biochemistry DOI: 10.1021/acs.biochem.1c00028 http://feeds.feedburner.com/~r/acs/bichaw/~4/FbXsb3xAJtg More...	nmrlearner	Journal club	0	03-07-2021 07:38 AM
[ASAP] Protein Sequence Selection Method That Enables Full Consensus Design of Artificial l-Threonine 3-Dehydrogenases with Unique Enzymatic Properties Protein Sequence Selection Method That Enables Full Consensus Design of Artificial l-Threonine 3-Dehydrogenases with Unique Enzymatic Properties https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00570/20200925/images/medium/bi0c00570_0005.gif Biochemistry DOI: 10.1021/acs.biochem.0c00570 http://feeds.feedburner.com/~r/acs/bichaw/~4/fsYaXqh1J1g More...	nmrlearner	Journal club	0	09-28-2020 09:16 PM
[ASAP] Allosteric Influence of Extremophile Hairpin Motif Mutations on the Protein Splicing Activity of a Hyperthermophilic Intein Allosteric Influence of Extremophile Hairpin Motif Mutations on the Protein Splicing Activity of a Hyperthermophilic Intein https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00348/20200624/images/medium/bi0c00348_0008.gif Biochemistry DOI: 10.1021/acs.biochem.0c00348 http://feeds.feedburner.com/~r/acs/bichaw/~4/cRLdF9Ki9zk More...	nmrlearner	Journal club	0	06-25-2020 02:58 AM
[ASAP] Guest Sequence Can Influence RNA Encapsulation by an Engineered Cationic Protein Capsid Guest Sequence Can Influence RNA Encapsulation by an Engineered Cationic Protein Capsid https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00077/20200413/images/medium/bi0c00077_0006.gif Biochemistry DOI: 10.1021/acs.biochem.0c00077 http://feeds.feedburner.com/~r/acs/bichaw/~4/aUNIHNbp1mA More...	nmrlearner	Journal club	0	04-20-2020 05:10 PM
Molecularand Silica-Supported Molybdenum Alkyne MetathesisCatalysts: Influence of Electronics and Dynamics on Activity Revealedby Kinetics, Solid-State NMR, and Chemical Shift Analysis Molecularand Silica-Supported Molybdenum Alkyne MetathesisCatalysts: Influence of Electronics and Dynamics on Activity Revealedby Kinetics, Solid-State NMR, and Chemical Shift Analysis Deven P. Estes, Christopher P. Gordon, Alexey Fedorov, Wei-Chih Liao, Henrike Ehrhorn, Celine Bittner, Manuel Luca Zier, Dirk Bockfeld, Ka Wing Chan, Odile Eisenstein, Christophe Raynaud, Matthias Tamm and Christophe Cope?ret http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.7b09934/20171119/images/medium/ja-2017-09934n_0009.gif Journal of the...	nmrlearner	Journal club	0	11-29-2017 09:22 AM
[NMR paper] Enhancement of antibiotic-activity through complexation with metal ions - Combined ITC, NMR, enzymatic and biological studies. Enhancement of antibiotic-activity through complexation with metal ions - Combined ITC, NMR, enzymatic and biological studies. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Enhancement of antibiotic-activity through complexation with metal ions - Combined ITC, NMR, enzymatic and biological studies. J Inorg Biochem. 2017 Feb;167:134-141 Authors: Möhler JS, Kolmar T, Synnatschke K, Hergert M, Wilson LA, Ramu S, Elliott AG, Blaskovich MA, Sidjabat HE,...	nmrlearner	Journal club	0	09-05-2017 12:41 PM
[NMR paper] Helix formation by the phospholipase A2 38-59 fragment: influence of chain shortening Helix formation by the phospholipase A2 38-59 fragment: influence of chain shortening and dimerization monitored by nmr chemical shifts. Related Articles Helix formation by the phospholipase A2 38-59 fragment: influence of chain shortening and dimerization monitored by nmr chemical shifts. Biopolymers. 1994 May;34(5):647-61 Authors: JimÃ©nez MA, CarreÃ±o C, Andreu D, Blanco FJ, Herranz J, Rico M, Nieto JL The solution structure of a peptide fragment corresponding to the 38-59 region of porcine phospholipase A2 has been investigated using CD,...	nmrlearner	Journal club	0	08-22-2010 03:33 AM
[NMR paper] Helix formation by the phospholipase A2 38-59 fragment: influence of chain shortening Helix formation by the phospholipase A2 38-59 fragment: influence of chain shortening and dimerization monitored by nmr chemical shifts. Related Articles Helix formation by the phospholipase A2 38-59 fragment: influence of chain shortening and dimerization monitored by nmr chemical shifts. Biopolymers. 1994 May;34(5):647-61 Authors: JimÃ©nez MA, CarreÃ±o C, Andreu D, Blanco FJ, Herranz J, Rico M, Nieto JL The solution structure of a peptide fragment corresponding to the 38-59 region of porcine phospholipase A2 has been investigated using CD,...	nmrlearner	Journal club	0	08-22-2010 03:33 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off